Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11300 174 / 4e-50 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 167 / 7e-48 S-locus lectin protein kinase family protein (.1.2) AT1G11350 166 / 2e-47 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61610 162 / 7e-46 S-locus lectin protein kinase family protein (.1) AT4G21390 160 / 2e-45 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 142 / 5e-39 S-locus lectin protein kinase family protein (.1) AT1G11280 139 / 1e-37 S-locus lectin protein kinase family protein (.1.2.3.4) AT4G27290 137 / 3e-37 S-locus lectin protein kinase family protein (.1) AT1G11410 136 / 6e-37 S-locus lectin protein kinase family protein (.1) AT1G61380 131 / 3e-35 SD1-29 S-domain-1 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G038300 [exp] 377 / 4e-132 AT1G11330 330 / 1e-105 S-locus lectin protein kinase family protein (.1.2) Potri.011G037900 [exp] 378 / 5e-129 AT1G11330 630 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037800 [exp] 343 / 7e-114 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038401 [exp] 348 / 1e-112 AT1G11330 826 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038000 [exp] 340 / 9e-111 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 335 / 2e-110 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 266 / 5e-84 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 265 / 1e-83 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 261 / 2e-82 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014723 [exp] 153 / 2e-45 AT1G11340 255 / 7e-79 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 150 / 1e-41 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 150 / 2e-41 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 149 / 5e-41 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 148 / 7e-41 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 148 / 9e-41 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10013246 [exp] 147 / 1e-40 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 145 / 6e-40 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10013244 [exp] 145 / 6e-40 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 145 / 7e-40 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.011G038100.1 pacid=42782090 polypeptide=Potri.011G038100.1.p locus=Potri.011G038100 ID=Potri.011G038100.1.v4.1 annot-version=v4.1 ATGGGACTTGGCAACAGCGAAGTTGCAGTAGCTCTTCTTCTGTTTCTATCATGTTCCTGTTCAGTTTATGGTGATGCAGGAGATACCATAACAACTTCTC AACCCATCAAAGATCCGGAAGCTATAGAGTCTGCCGGAAAAATGTTTCAACTGGGATTTTTCAGCCCAGTTAATTCAACATATCGATATGTCGGAATATG GTATAGTAATATATCAGCATCAACTCCAGTACTATGGGTGGCCAACCGAAACAAGCCAATCAACGATTCTTCTGGGATGATGACAATATCTGAAGATGGA AATCTTGTGGTTTTGAATGGTCAGGGAGAGGTTCTTTGGTCATCAAATGTTTCAAATGGTTTCAATCAGTCAACTGCACAGCTTACTGATGATGGAAACC TTGTCTTGAAAGCTGGACCGAATGGAAACCTTGTATGGCAAAGTTTCCGGCAGCCTACGGATACTTGCTTATCAAAGATGACACTTACTGCTAACGCAAG AACAGGGAACAAGACACTGCTAATGTCATGGAGAAGCTCATCTGATCCTTCAGTTGGAAACTACTCTGCTGGTGTCAATCCATTAGGAATTCCTGAGCTA TTCATCTGGTACTGTCACGACCCGAATCCCGGATCCATGACCGGCACATAG
AA sequence Show only first row Show all	>Potri.011G038100.1 pacid=42782090 polypeptide=Potri.011G038100.1.p locus=Potri.011G038100 ID=Potri.011G038100.1.v4.1 annot-version=v4.1 MGLGNSEVAVALLLFLSCSCSVYGDAGDTITTSQPIKDPEAIESAGKMFQLGFFSPVNSTYRYVGIWYSNISASTPVLWVANRNKPINDSSGMMTISEDG NLVVLNGQGEVLWSSNVSNGFNQSTAQLTDDGNLVLKAGPNGNLVWQSFRQPTDTCLSKMTLTANARTGNKTLLMSWRSSSDPSVGNYSAGVNPLGIPEL FIWYCHDPNPGSMTGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11300			protein serine/threonine kinas...		Potri.011G038100 [exp]	0	1
AT3G53510		ABCG20	ATP-binding cassette G20, ABC-...		Potri.006G215100 [exp]	115.41	0.5004
AT3G06880			Transducin/WD40 repeat-like su...		Potri.018G083600 [exp]	219.30	0.4621

Compare expression of checked genes

Potri.011G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.