Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 328 / 9e-105 S-locus lectin protein kinase family protein (.1.2) AT1G11350 307 / 8e-97 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11300 312 / 4e-95 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61390 268 / 5e-82 S-locus lectin protein kinase family protein (.1.2) AT1G61610 266 / 2e-81 S-locus lectin protein kinase family protein (.1) AT4G21390 264 / 2e-80 B120 S-locus lectin protein kinase family protein (.1) AT1G61380 260 / 3e-79 SD1-29 S-domain-1 29 (.1) AT1G61480 251 / 6e-76 S-locus lectin protein kinase family protein (.1) AT4G27290 249 / 2e-75 S-locus lectin protein kinase family protein (.1) AT1G11280 249 / 3e-75 S-locus lectin protein kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G037900 [exp] 793 / 0 AT1G11330 630 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038401 [exp] 715 / 0 AT1G11330 826 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037800 [exp] 710 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 696 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038000 [exp] 687 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 497 / 3e-170 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 494 / 3e-169 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038524 [exp] 481 / 2e-168 AT1G11330 437 / 1e-145 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 486 / 5e-166 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007600 [exp] 270 / 1e-80 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 259 / 3e-78 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014808 [exp] 236 / 7e-71 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 238 / 8e-71 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 235 / 2e-69 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 235 / 3e-68 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024064 [exp] 231 / 3e-68 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006742 [exp] 231 / 3e-67 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 229 / 3e-67 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 229 / 3e-67 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G038300.1 pacid=42780459 polypeptide=Potri.011G038300.1.p locus=Potri.011G038300 ID=Potri.011G038300.1.v4.1 annot-version=v4.1 ATGGGACTTGGCAACTGCGAAGTTGCAGTAGCTCTTCTTCTGTTTCTATCATGTTCCTGTTCAGTTTATGGTGATGCAGGAGATACCATAACTACTTCTC AGCCCATCAAAGATCCAGAAGCTGTAGTGTCTGCCGGAAAAAAGTTCAAACTGGGATTTTTCAGCCCAGTTAATTCAACATATCGATATGTCGGAATATG GTATAGTAATATATCAGCAGCAACTCCAGTACTATGGGTGGCCAACAGAAACAACCCAATCAACGATTCTTCTGGGATGATGACAAAATCTGAAGATGCA AATCTTGTGGTTTTGAATGGTCAGGGAGAGGTTCTGTGGTCATCAAATGTTTCAATTGGGTTCAATCAGTCAACTGCACAGCTTACTGATGATGGAAACC TTGTCTTGAAAGCTGGACCGAATGGAAACCTTGTATGGCAAAGTTTCCAGCAGCCTACGGATACTTACTTATCAAAGATGAGACTTAGTGCTAACGCAAG AACAGGGAACAAGACACTGCTAATGTCATGGAGAAGCTCATCTGATCCTTCTGTTGGAAACTTCTCTGCTGGTGTCAATCCATTAGGAGTTCCTGAGTTC TTCATCTGGTACAATGGTCATCCATTTTGGCGTAGTGGTCCATGGGGTGGTAAGAATTTTATCGGAATACCAGGAATGTATACTTCTGTGTATTTAGATG GATTTAGTCTACAAAATGAAGGAGATGGCACTTTCACTCTGAGTTCAATTAGAGACCCAGCTTTCCGATTAACGTATGTTTTAACTTCTCATGGAAAATT TAAAGAACAATACTGGGATTATGGGAAGCAAGGTTGGGAGTATGACTGGGAAGTTCCATCAACTGAGTGTGATATTTATGGCAAGTGCGGGCCATTTGGA AGCTGCGATGCACAGAATTCACCTATCTGCACATGTTTAAAAGGGTTTGTTGCAAAACATCAAGATGAATGGAACAAAGGAATTTGGACTAGCGGTTGTG TTAGGTTGACATCGTTGCAGTGTGATAGAATACAAAATGGTAGTGAAGTGGGAAAAGAAGATGGGTTTATCAAGCTAGAGATGATGAAGGTGCCAACCTT TGCCGATTACTGGCCATATCCGTCCTCCGAACAAGAATGCAAAGATGAGTGCTTGAAGAATTGTTCCTGTGTCGCTTATGTTGTGTGTGGTCCCGCACCA TGTGATGGGGGACCACCACATTAA
AA sequence Show only first row Show all	>Potri.011G038300.1 pacid=42780459 polypeptide=Potri.011G038300.1.p locus=Potri.011G038300 ID=Potri.011G038300.1.v4.1 annot-version=v4.1 MGLGNCEVAVALLLFLSCSCSVYGDAGDTITTSQPIKDPEAVVSAGKKFKLGFFSPVNSTYRYVGIWYSNISAATPVLWVANRNNPINDSSGMMTKSEDA NLVVLNGQGEVLWSSNVSIGFNQSTAQLTDDGNLVLKAGPNGNLVWQSFQQPTDTYLSKMRLSANARTGNKTLLMSWRSSSDPSVGNFSAGVNPLGVPEF FIWYNGHPFWRSGPWGGKNFIGIPGMYTSVYLDGFSLQNEGDGTFTLSSIRDPAFRLTYVLTSHGKFKEQYWDYGKQGWEYDWEVPSTECDIYGKCGPFG SCDAQNSPICTCLKGFVAKHQDEWNKGIWTSGCVRLTSLQCDRIQNGSEVGKEDGFIKLEMMKVPTFADYWPYPSSEQECKDECLKNCSCVAYVVCGPAP CDGGPPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038300 [exp]	0	1
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Potri.003G088700 [exp]	7.07	0.9138
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072000 [exp]	8.48	0.9052	Pt-CYP704.1
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	13.49	0.8899	Pt-GLU1.2
AT1G12800			Nucleic acid-binding, OB-fold-...		Potri.003G124200 [exp]	26.21	0.8998
AT2G16250			Leucine-rich repeat protein ki...		Potri.002G260100 [exp]	27.56	0.8778
AT4G27220			NB-ARC domain-containing disea...		Potri.019G013140 [exp]	29.47	0.8853
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.012G033500 [exp]	30.00	0.8863
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.001G436300 [exp]	30.59	0.8948
AT5G15070			Phosphoglycerate mutase-like f...		Potri.017G076400 [exp]	35.00	0.8640
AT3G49055			unknown protein		Potri.015G146100 [exp]	37.94	0.8710

Compare expression of checked genes

Potri.011G038300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.