Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 826 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 794 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11350 782 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G21390 714 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61390 688 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61480 677 / 0 S-locus lectin protein kinase family protein (.1) AT1G61490 676 / 0 S-locus lectin protein kinase family protein (.1) AT1G61610 672 / 0 S-locus lectin protein kinase family protein (.1) AT1G61370 671 / 0 S-locus lectin protein kinase family protein (.1) AT1G61380 671 / 0 SD1-29 S-domain-1 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G038000 [exp] 1919 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037800 [exp] 1486 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 1462 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037900 [exp] 1204 / 0 AT1G11330 630 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 1087 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 1076 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 1030 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027300 [exp] 1014 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039300 [exp] 997 / 0 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007600 [exp] 686 / 0 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 684 / 0 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 657 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018407 [exp] 639 / 0 AT1G61390 732 / 0.0 S-locus lectin protein kinase family protein (.1.2) Lus10018405 [exp] 638 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10007603 [exp] 630 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10006742 [exp] 626 / 0 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 626 / 0 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 619 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 613 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G038401.1 pacid=42781331 polypeptide=Potri.011G038401.1.p locus=Potri.011G038401 ID=Potri.011G038401.1.v4.1 annot-version=v4.1 ATGGGACTTGGCAACTGCGAAGTTGCAGTAGCTCTTCTTCTGTTTCTATCATGTTCCTCTTCAGTTTATGGTGATGCAGGAGATACCATAACTACTTCTC AACCCATCAAAGATCCAGAAGCTATAGTGTCTGCCGGCAACAAGTTCAAACTGGGATTTTTCAGCCCAGTTAATTCAACATATCGATATGTCGGAATATG GTATAGTAATATATCAGTAGCAACTCCAGTACTATGGGTGGCCAACAGAAACAACCCAATCAACGATTCTTCTGGGATGATGACAATATCTGAAGATGGA AATCTTGTGGTTTTGAATGGTCAGGGAGAGGTTCTGTGGTCATCAAATGTTTCAATTGGGTTCAATCAGTCAACTGCACAGCTTACTGATGATGGAAACC TTGTCTTGAAAGCTGGACCGAATGGAAACCTTGTATGGCAAAGTTTCCAGCAGCCTACGGATACTTACTTAATAAAGATGAGACTTAGTGCTAACGCAAG AACAGGGAAGAAGACACTGCTAATGTCATGGAGAAGCTCATCTGATCCTTCAGTTGGAAACTTCTCTGCTGGTATCAATCCATTAGGAATTCCTGAGTTC TTCATGTGGTACAATGGTCATCCATTTTGGCGTAGTGGTCCATGGTGTGGTCAGACTTTTATTGGAATACCAGGAATGTATACTTCTGTGTATCTAAGGG GATTTACTCTACAAGATGAAGGAGATGGCACTTTCACTCTGAGTTCAATTCAAGACCCAGCTTACCGTTTAACACATGTTTTGACTTCGCATGGAAAATT TACAGAACAATACTGGGATTATGGGAAGCAAGGTTGGGAGAATAACTTGGAAGTTCCATCAACTGAGTGTGATATTTATGGCAAGTGCGGGCCATTTGGA AGCTGCGATGCACAGAATTCACCTATCTGCAGATGTTTAAAAGGGTTTGTTCCAGAAAATCAAGATGAATGGAATAAAGGAATTTGGACTAGCGGATGTG TTAGGATGACATCGTTGCAGTGTGATAGAATACAGAATGGTAGTGAAGTGGGAAAAGAAGATGGGTTTATGAAGCTAGAGATGAGGAAGGTGCCAACCTT TGCCGAGTACTGGTCAAATGCGTCCTCGTCCGGACAACAATGCGAGGATGAGTGCTTGAGGAATTGTTCCTGTGTCGCTTATTCATATTATAATGGTTTT GGTTGTATGGCTTGGACAGGAAACTTGATTGATATACAAAAGTTCTCTGAAGGAGGAACAGATCTCAACATTCGCCTGGCGTATACAGAACTTGGAGATA CCATAACTACTTCTCAACCCATCAAAGATCCGGAAGCTATAGAGTCTGCCGGAAAAATGTTTCAACTGGGATTTTTCAGCCCAGTTAATTCAAGATATCG ATATGTCGGAATATGGTATAGTAATATATCAGCATCAACTCCAGTACTATGGGTGGCCAACAGAAACAACCCAATCAACGATTCTTCTGGGATGATGACA ATATCTGAAGATGGAAATCTTGTGGTTTTGAATGGTCAGGGAGAGGTTCTGTGGTCATCAAATGTTTCAATTGGGTTCAATCTGTCAACTGCACAGCTTA CTGATGATGGAAACCTTGTCTTGAAAGCTGGACCGAATGGAAACCCTGTATGGCAAAGTTTCCAGCAGCCTACGGATACTTACTTACCAAAGATGAGACT TAGTGCTAACGCAAGAACTGGGAACAAGACACTGCTAATGTCATGGAGAAGCTCATCTGATCCTTCTGTTGGAAACTTCTCTGCTGGTGTCAATCCATTA GGAATTCCTGAGTTCTTCATCTGGTACAATGGTCATCCATTTTGGCGTAGTGGTCCATGGGGTGGCCAGAACTTTACTGGAAAACCAGGAATGTCTACTT CTGTGTATCTAAGTGGATTTACTCCACAAGATGAAGGAGATGGCACTTTCACTCTGAGTTCAATTCAAGACCCAGCTTTCCGATTAACGTATGTTTTGAC TTCTCATGGAAAACTTACAGAACAATACTGGGATTATGGGAAGGGAGGTTGGAAGTATGACTGGGAAGCTCCATCCACTGAGTGTGATATTTATGGCAAG TGCGGGCCGTTTGGAAGCTGCGATGCACAGAATTCACCTATCTGCACATGTTTAAAAGGGTTTGATGCAAAAAATCTAGATGAATGGAATAAAGGAATTT GGACTAGCGGTTGTGTTAGGATGACATCGTTGCAGTGTGATGGAATACACAATGGTAGTGAAGTGAGAAAAGAAGATCGGTTTATGAAGCTGGAGATGAT GAAGGTGCCAGCCTTTGCCGAGTACTGGCCATATCTGTCCTCCGAACAAGAATGCAAAGATGAGTGCTTGAAGAATTGTTCCTGTGTCGCTTATTCATAT TATAATGGTTTTGGCTGTATGGCATGGACAGGAAACTTGATTGATATACAACAGTTCTCTGAAGGAGGAACAGATCTCAACATTCGCCTGGGGTATACAG AACATGTTGCAGATAACAAGAGAAACATGAAAGTAATCATCAGTATGTCAGTGATTGTAGGAGCCATTGCCATCTTCATCTGTGTGTTTTTTTCTTGGAA ATGGATGGCTGCACATAGAGAAAGGAAGTTGACAAGTGAGGAGACCTTATCGTTCAAAACGAGAGAAGCACAAGAAACAGTTTTTGATGGAAACTTGCCC GAAAACGTCAGGGAAGTTAAACTGGAACCGCTCTTCAAATTACAAATTCTTGAAACTGCTACAAACAACTTTGACATATCGAAGAAGCTTGGGCAGGGCG GCTTTGGTGCAGTATACAGGGGAAAATTACCAGATGGGCAGGAAATAGCTGTCAAAAGACTTTCTAAAACATCTGGTCAAGGGCTCGAAGAGTTTATGAA TGAAGTTGCGGTGATTTCTAAACTCCAACATAGGAATCTTGTGAGACTTCTTGGTTGCTGTGTTGAAGGAGAAGAGATGATGTTGGTTTATGAGTACATG CCGAATAAAAGCTTGGATGCCTTTCTCTTTGATTCACTCAGGAAAGGACAACTAGATTGGAAAAGACGCTTCAACATTATTAATGGAATTTGTCGAGGTC TTCTTTACCTTCACAGAGATTCTAGACTAAGAATTATTCATAGAGATCTGAAGCCAAGTAACATCTTATTGGACCACGAGCTGAATCCAAAAATTTCAGA CTTCGGAATAGCCAGGATTTCTGGCGGCAATGAAGTGAATACTACCAGGGTTGTTGGAACCTTTGGCTTTATGTCCCCTGAATATTTAATGGAAGGAAGA TTTTCAGAGAAATCAGATGTGTTTAGCTTTGGAGTGTTGTTGCTGGAGATTGTGAGCGGAAGAAAGAACGCTCATTTTTATAGCGATGAGCATGCTTTGA GTCTTATAGGATTTGCATGGAAACTGTGGAATGAAGGTGACATTGCAGCTTTGGTCGATCCTGCAATATCAGATCCATGTTCTCAGGTGGAGATATTCCG ATGCATACATGTTGCTCTGTTTTGTGTGCAAGAATTGGCGAAGGACAGACCGGCCGTGTCAACTATCATTTCCATGCTGAATAGTGAAATTGTGGATCTT CCTACTCCAAAGAAACCAGCATTTGTTGAAAGGCAGACTTCCTTGGGTACAGAGGCCATTACTCAGAGCCAAAAGATAAATTCCATTAACAATGTGACGA TTTCTGATCTTAAAGGCCGATAG
AA sequence Show only first row Show all	>Potri.011G038401.1 pacid=42781331 polypeptide=Potri.011G038401.1.p locus=Potri.011G038401 ID=Potri.011G038401.1.v4.1 annot-version=v4.1 MGLGNCEVAVALLLFLSCSSSVYGDAGDTITTSQPIKDPEAIVSAGNKFKLGFFSPVNSTYRYVGIWYSNISVATPVLWVANRNNPINDSSGMMTISEDG NLVVLNGQGEVLWSSNVSIGFNQSTAQLTDDGNLVLKAGPNGNLVWQSFQQPTDTYLIKMRLSANARTGKKTLLMSWRSSSDPSVGNFSAGINPLGIPEF FMWYNGHPFWRSGPWCGQTFIGIPGMYTSVYLRGFTLQDEGDGTFTLSSIQDPAYRLTHVLTSHGKFTEQYWDYGKQGWENNLEVPSTECDIYGKCGPFG SCDAQNSPICRCLKGFVPENQDEWNKGIWTSGCVRMTSLQCDRIQNGSEVGKEDGFMKLEMRKVPTFAEYWSNASSSGQQCEDECLRNCSCVAYSYYNGF GCMAWTGNLIDIQKFSEGGTDLNIRLAYTELGDTITTSQPIKDPEAIESAGKMFQLGFFSPVNSRYRYVGIWYSNISASTPVLWVANRNNPINDSSGMMT ISEDGNLVVLNGQGEVLWSSNVSIGFNLSTAQLTDDGNLVLKAGPNGNPVWQSFQQPTDTYLPKMRLSANARTGNKTLLMSWRSSSDPSVGNFSAGVNPL GIPEFFIWYNGHPFWRSGPWGGQNFTGKPGMSTSVYLSGFTPQDEGDGTFTLSSIQDPAFRLTYVLTSHGKLTEQYWDYGKGGWKYDWEAPSTECDIYGK CGPFGSCDAQNSPICTCLKGFDAKNLDEWNKGIWTSGCVRMTSLQCDGIHNGSEVRKEDRFMKLEMMKVPAFAEYWPYLSSEQECKDECLKNCSCVAYSY YNGFGCMAWTGNLIDIQQFSEGGTDLNIRLGYTEHVADNKRNMKVIISMSVIVGAIAIFICVFFSWKWMAAHRERKLTSEETLSFKTREAQETVFDGNLP ENVREVKLEPLFKLQILETATNNFDISKKLGQGGFGAVYRGKLPDGQEIAVKRLSKTSGQGLEEFMNEVAVISKLQHRNLVRLLGCCVEGEEMMLVYEYM PNKSLDAFLFDSLRKGQLDWKRRFNIINGICRGLLYLHRDSRLRIIHRDLKPSNILLDHELNPKISDFGIARISGGNEVNTTRVVGTFGFMSPEYLMEGR FSEKSDVFSFGVLLLEIVSGRKNAHFYSDEHALSLIGFAWKLWNEGDIAALVDPAISDPCSQVEIFRCIHVALFCVQELAKDRPAVSTIISMLNSEIVDL PTPKKPAFVERQTSLGTEAITQSQKINSINNVTISDLKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038401 [exp]	0	1
AT2G40070			unknown protein		Potri.010G177000 [exp]	1.41	0.9734
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060300 [exp]	2.00	0.9744
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060200 [exp]	4.24	0.9693
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028800 [exp]	5.29	0.9673
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029000 [exp]	9.16	0.9441
AT5G61710			unknown protein		Potri.014G123500 [exp]	9.74	0.9665
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038000 [exp]	11.22	0.9192
AT1G14550			Peroxidase superfamily protein...		Potri.008G022501 [exp]	12.40	0.9483
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.005G108300 [exp]	12.64	0.9348
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.005G078801 [exp]	14.14	0.9595

Compare expression of checked genes

Potri.011G038401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.