Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 394 / 1e-130 S-locus lectin protein kinase family protein (.1.2) AT4G21390 371 / 1e-121 B120 S-locus lectin protein kinase family protein (.1) AT1G11350 369 / 6e-121 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11300 382 / 1e-120 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61490 356 / 3e-116 S-locus lectin protein kinase family protein (.1) AT1G61610 355 / 2e-115 S-locus lectin protein kinase family protein (.1) AT1G65800 353 / 6e-115 ARK2 receptor kinase 2 (.1) AT1G61370 350 / 1e-113 S-locus lectin protein kinase family protein (.1) AT1G61420 347 / 8e-113 S-locus lectin protein kinase family protein (.1) AT1G61440 345 / 3e-112 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G038800 [exp] 624 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038401 [exp] 604 / 0 AT1G11330 826 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038000 [exp] 578 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037800 [exp] 568 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037900 [exp] 483 / 2e-167 AT1G11330 630 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 468 / 2e-159 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027300 [exp] 468 / 2e-159 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 451 / 6e-153 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 451 / 7e-153 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018407 [exp] 360 / 2e-117 AT1G61390 732 / 0.0 S-locus lectin protein kinase family protein (.1.2) Lus10018408 [exp] 358 / 9e-116 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 352 / 4e-114 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 347 / 2e-112 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 347 / 2e-112 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 345 / 1e-111 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 345 / 1e-111 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037733 [exp] 330 / 4e-111 AT4G21380 402 / 9e-134 receptor kinase 3 (.1) Lus10007600 [exp] 356 / 7e-111 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10016862 [exp] 340 / 4e-110 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G038500.2 pacid=42780905 polypeptide=Potri.011G038500.2.p locus=Potri.011G038500 ID=Potri.011G038500.2.v4.1 annot-version=v4.1 ATGGCATGGACAGGAAACTTGATTGATATACAAAAGTTCTCTGAAGGAGGGACAGATCTCAATATTCGCCTGGCGTATAAAGAACTTGGTAACAAGAGAA ACATGAAAGTAATCATCAGTATGTCAGTGATTGTAGGAGCCATAGCCATCTTCATCTGTGTGTTTTTTTCTTGGAAGTGGATGGCTAAACATAGAGAAAG GAAGTTGATAAGAGAGGAGACCTTATCGTTCAAAACGAGAGAAGCACAAGAAACAGTACTTTTTAATGGAAACTTGCCCGGAAACGTCAAGGAAGTTAAA CTTGAACCGCTCTTCAAATTAAAAATTCTTGAAACTGCTACAAACAACTTTGACATATCCAAGAAGCTTGGGCAGGGCGGCTTTGGTGCTGTATACCGGG GAAAATTGCCAGATGGACAGGAAATAGCTGTGAAAAGACTCTCTAGAACATCAAGTCAAGGGCGCGAAGAGTTTATGAATGAAGTTGTGGTGATTTCTAA ACTCCAACACAGGAATCTTGTGAGACTTCTTGGTTGCTGTGTTGAAGGAGAAGAGATGATGTTGGTTTATGAGTACATGCCGAATAAAAGCTTGGATGCA TTTCTCTTTGATTCACTCAGGAAAGGACAACTAGATTGGGAAAGACGCTTCGACATTATTAACGGCATTTGTCGAGGTCTTCTTTACCTTCACAGAGATT CTAGACTAAGAATTATTCATAGAGATCTGAAGCCAAGTAACATCTTATTGGACCGTGAGCTGAATCCCAAAATTTCAGACTTTGGAATGGCCAGGATTTT TTGTGGCAATGAAGATCAAGTGATCAATACTACCAGGGTCGTTGGAACCTATGGCTATATGTCCCCTGAATATTTAATGAAAGGAAGATTTTCAGAGAAA TCAGATGTATTTAGCTTTGGAGTGTTGTTGCTGGAGATCGTAAGCGGAAGAAAGAACTCTAGTTTTTATGACAATGAGCATTCTTTGAGTCTTATAGGAT TTGTATGTCTGTCCGCCTCCCTGCCTGAGATATATCTGCAAAGCTCCTTTCAATTTCTGATACTATTTACATTGCTGGGTATGACTTTTCTATTAGATGT CAGTTCTACGGTCCTTATATTCTACATGCATATTTAA
AA sequence Show only first row Show all	>Potri.011G038500.2 pacid=42780905 polypeptide=Potri.011G038500.2.p locus=Potri.011G038500 ID=Potri.011G038500.2.v4.1 annot-version=v4.1 MAWTGNLIDIQKFSEGGTDLNIRLAYKELGNKRNMKVIISMSVIVGAIAIFICVFFSWKWMAKHRERKLIREETLSFKTREAQETVLFNGNLPGNVKEVK LEPLFKLKILETATNNFDISKKLGQGGFGAVYRGKLPDGQEIAVKRLSRTSSQGREEFMNEVVVISKLQHRNLVRLLGCCVEGEEMMLVYEYMPNKSLDA FLFDSLRKGQLDWERRFDIINGICRGLLYLHRDSRLRIIHRDLKPSNILLDRELNPKISDFGMARIFCGNEDQVINTTRVVGTYGYMSPEYLMKGRFSEK SDVFSFGVLLLEIVSGRKNSSFYDNEHSLSLIGFVCLSASLPEIYLQSSFQFLILFTLLGMTFLLDVSSTVLIFYMHI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038500 [exp]	0	1
					Potri.004G069101 [exp]	5.83	0.7772
AT5G01750			Protein of unknown function (D...		Potri.016G131701 [exp]	6.70	0.7569
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G010200 [exp]	9.38	0.6472
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038000 [exp]	15.45	0.7795
					Potri.015G084300 [exp]	17.54	0.7314
AT5G01750			Protein of unknown function (D...		Potri.016G131300 [exp]	22.44	0.7567
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.005G233500 [exp]	31.70	0.6924
AT5G40100			Disease resistance protein (TI...		Potri.006G283700 [exp]	47.98	0.6447
AT5G52160			Bifunctional inhibitor/lipid-t...		Potri.015G139100 [exp]	57.00	0.6967
AT2G26530		AR781	Protein of unknown function (D...		Potri.009G068200 [exp]	61.82	0.6772

Compare expression of checked genes

Potri.011G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.