Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 437 / 2e-145 S-locus lectin protein kinase family protein (.1.2) AT1G11350 388 / 1e-126 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61480 382 / 1e-124 S-locus lectin protein kinase family protein (.1) AT1G61390 377 / 2e-124 S-locus lectin protein kinase family protein (.1.2) AT1G11300 393 / 6e-123 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61490 370 / 5e-120 S-locus lectin protein kinase family protein (.1) AT1G61420 367 / 5e-119 S-locus lectin protein kinase family protein (.1) AT1G61370 368 / 6e-119 S-locus lectin protein kinase family protein (.1) AT1G61500 367 / 1e-118 S-locus lectin protein kinase family protein (.1) AT1G61550 365 / 5e-118 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G037900 [exp] 872 / 0 AT1G11330 630 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038000 [exp] 847 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 845 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038401 [exp] 836 / 0 AT1G11330 826 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037800 [exp] 830 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 553 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 540 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 537 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027300 [exp] 536 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018408 [exp] 351 / 2e-111 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018407 [exp] 345 / 5e-110 AT1G61390 732 / 0.0 S-locus lectin protein kinase family protein (.1.2) Lus10007600 [exp] 349 / 9e-107 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10016862 [exp] 322 / 1e-101 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 322 / 3e-101 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 322 / 3e-101 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10016859 [exp] 318 / 3e-101 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 321 / 5e-101 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 319 / 4e-100 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 316 / 5e-99 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G038524.1 pacid=42781478 polypeptide=Potri.011G038524.1.p locus=Potri.011G038524 ID=Potri.011G038524.1.v4.1 annot-version=v4.1 ATGGAGCCCACGGATACTTATTTACCAAAGATGAGACTTAGTGCTAACGCAAGAACAGGGAACAAGACACTGCTAATGTCATGGAGAAGCTCATCTGATC CTTCAGTTGGAAACTTCTCTGCTGGTCTCAATCCATTAGGAATTCCTGAGTTCTTCATCTGGAACAATGGTCATCCATTTTGGCGTAGTGGTCCATGGGG TGGTAAGAATTTTATCGGAATACCAGGAATGTATACTTCTGTGTATCTAAGTGGATTTACTCTACAAGATGAAGGAGATGGCACTTTCACTCTGAGTTCA ATTCAAGACCCAGCTTACCGTTTAACACATGTTTTGACTTCGCATGGAAAATTTACAGAACAATACTGGGATTATGGGAAGCAAGGTTGGGAGTATGACT GGGAAGTTCCATCAACTGAGTGTGATATTTATGGCAAGTGCGGGCCATTTGGAAGCTGCGATGCACAGAATTCACCTATCTGCACATGTTTAAAAGGGTT TGTTGCAAAAAATCAAGATGAATGGAAGAAAGGAATTTGGACTAGCGGATGTGTTAGGATGACATCGTTGCAGTGTGATAGAATACAGAATGGTAGTGAA GTGGGAAAAGAAGATGGCTTTAAGAAGCTGGAGATGATGAAGGTGCCAACCTTTGCCGAGTACTGGTCATATGCGTCCTCGTCCGAACAAGAATGCAAAG ATGAGTGCTTGAAGAATTGTTCCTGTGTCGCTTATTCATATTATAATGATCTTGGATGTATGGCATGGACAGGAAACTTGATTGATATACAAAAGTTCTC TGAAGGAGGGACAGATCTCAACATTCGCCTGGCGTACACAGAACTTGTTGCAGATAACAAGAGAAACATGAAAGTAATCATCGGTATGTCAGTGATTGTA GGAGTCATAGCTATCTGCATCTGTGTGTTTTTTTCTTGTAAGTGGATGGCTACACATAGAGAAAGGAATTTGATAAATGAGGAGACCTTATCGTCAGAAG CTCAAGAAACAGTTTTTGATGGAAACTTGCCCGAAAACGTCAGGGAAGTTAAACTTGAACCATTCTTCAAATTACAAATTCTTGAAACTGCTACAAACAA CTTTGACATATCCAAGAAGCTTGGGCAGGGCGGCTTTGGTGCAGTATACAGGGGAAAATTGCCAGATGGGCAGGAAATAGCTGTGAAAAGACTCTCTAGA ACATCTGGTCAAGGGCGCGAAGAGTTTATGAATGAAGTTGCGGTGATTTCTAAACTCCAACATAGGAATCTTGTGAGACTTCTTGGTTGCTGTGTTGAAG GAGAAGAGATGATGTTGGTTTATGAGTACCTGCCGAATAAAAGCTTGGATGCATTTCTCTTTGATTCACTCAGGAAAAGACACCTAGATTGGGAAAGACG CTTCGAATTATTAACGGGATTTGTCGAGGTCTTCTTTACCTTCACAGAGATTCTAGACTAA
AA sequence Show only first row Show all	>Potri.011G038524.1 pacid=42781478 polypeptide=Potri.011G038524.1.p locus=Potri.011G038524 ID=Potri.011G038524.1.v4.1 annot-version=v4.1 MEPTDTYLPKMRLSANARTGNKTLLMSWRSSSDPSVGNFSAGLNPLGIPEFFIWNNGHPFWRSGPWGGKNFIGIPGMYTSVYLSGFTLQDEGDGTFTLSS IQDPAYRLTHVLTSHGKFTEQYWDYGKQGWEYDWEVPSTECDIYGKCGPFGSCDAQNSPICTCLKGFVAKNQDEWKKGIWTSGCVRMTSLQCDRIQNGSE VGKEDGFKKLEMMKVPTFAEYWSYASSSEQECKDECLKNCSCVAYSYYNDLGCMAWTGNLIDIQKFSEGGTDLNIRLAYTELVADNKRNMKVIIGMSVIV GVIAICICVFFSCKWMATHRERNLINEETLSSEAQETVFDGNLPENVREVKLEPFFKLQILETATNNFDISKKLGQGGFGAVYRGKLPDGQEIAVKRLSR TSGQGREEFMNEVAVISKLQHRNLVRLLGCCVEGEEMMLVYEYLPNKSLDAFLFDSLRKRHLDWERRFELLTGFVEVFFTFTEILD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038524 [exp]	0	1
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.003G003400 [exp]	13.07	0.8786
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038800 [exp]	16.97	0.8257
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.012G102200 [exp]	17.08	0.8573
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.017G141300 [exp]	18.16	0.8447
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Potri.002G121200 [exp]	21.07	0.8646	Pt-IFS1.43
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G075000 [exp]	23.30	0.8630
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231200 [exp]	25.92	0.8558
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.002G121400 [exp]	26.83	0.8527	Pt-IFS1.51
AT1G27290			unknown protein		Potri.001G058100 [exp]	30.39	0.8467
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036400 [exp]	35.24	0.8360

Compare expression of checked genes

Potri.011G038524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.