Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 797 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11350 756 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11300 744 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G21390 690 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61370 667 / 0 S-locus lectin protein kinase family protein (.1) AT1G61380 643 / 0 SD1-29 S-domain-1 29 (.1) AT1G61490 635 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 634 / 0 S-locus lectin protein kinase family protein (.1) AT1G11280 634 / 0 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61440 634 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G039200 [exp] 1167 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 1164 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039300 [exp] 1026 / 0 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039400 [exp] 1021 / 0 AT1G11330 822 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027400 [exp] 974 / 0 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 973 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037800 [exp] 971 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038401 [exp] 971 / 0 AT1G11330 826 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027300 [exp] 969 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018408 [exp] 664 / 0 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 658 / 0 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018407 [exp] 618 / 0 AT1G61390 732 / 0.0 S-locus lectin protein kinase family protein (.1.2) Lus10007603 [exp] 615 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 614 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 613 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018405 [exp] 608 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10006742 [exp] 605 / 0 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 600 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 600 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G039000.2 pacid=42781268 polypeptide=Potri.011G039000.2.p locus=Potri.011G039000 ID=Potri.011G039000.2.v4.1 annot-version=v4.1 ATGGAAATTGGCAGCTGCATCTTCATGGCAGCTCTTCGTCTCTTACTATGTTGTTTCTGTTGGCAACTTGGTGCTGCCGTAGATACCATAACATCATCTC AATACATCAAAGATCCTGAAGCTGTAGTTTCTGCTGGAAATAAGTTCAAACTGGGATTTTTTAGCCCTGGTAATTCAACAAACCGGTATGTAGGAATATG GTACAGCAATATTTCTGTTACAACTCCAGTCTGGATAGCTAACAGAAACAAGCCACTCAATGATTCTTCTGGGATTATGACAATATCTGAAGATGGAAAT ATTGTAGTTTTGGACGGTCGGAAAGAGATTCTTTGGTCGTCAAATGTTTCAAATGGGGTCAGTAACTCAAGTGCACAGCTTACGGATGATGGAAACGTAA TCCTGCGAGGGGGCGAAATTGGAAACAGCTTATGGCAGAGTTTCCAGGAACCATCTGATACTTTCATGCTGAAGATGAGACTTACTGCTAATAGAAGAAC GGGTAAGAAGACGCAAATAACATCATGGAAAAGCCCTTCTGATCCATCTGTTGGAAGTTTTTCTTCTGGTATTGAACCCTCAAGCATTCCTGAGGTTTTC GTTTGGAATGATAGCCGTCCATTCTGGCGGAGTGGTCCATGGAATGGTCAAGCCTTTATAGGAATTCCAGAAATGAATTCAGTTTATCTTAATGGGTATA ATCTTGTACAAGATGGAGATGGAACTTTTTCACTAAGCGTTGGGCTGGCCAATGAATCTTATATCACCAATTTTGCTTTGAGTTATGAAGGAAGATTTGG AGAAATGTATTGGGATTCTGCCAATGAGAGGTGGGAACATAAGAAGCAATATCCAGGAGATGATTGTGATATTTATGGAAAATGTGGGCCTTTTGGATTC TGTAATACACAGAATTCACTAATTTGCAGGTGCTTGAAAGGGTTTGAACCAAAAAATTCTGACGAGTGGAATAGAAGAAATTGGACAAATGGTTGTGTCA GGAGGAGGGAATTGAAATGCGAAAGAACACAAAGTGATGGTCAAGTGCCCAAAGAAGATGAGTTTTTGAAACTGGATAAGGTGAAAGTGCCAGACTTTTC TGAGTGGTCATCTTCAGCATCCGAACAAAATTGTAAGGATGAGTGCTTGAATAATTGCTCATGTATAGCTTACTCATATCATACTGGTATTGGTTGTATG CTATGGAGGGGAAAGTTAACTGATATAAGGAAGTTTTCCAGTGGAGGGGCTAATCTTTATGTCCGCCTTGCAGATTTGGAATTCGGAAAAAACAGAGATA TGAAAGCAGTTATCTGTATAACTGTGGTTACAGGAGCAATTATTGTTGCAGTTGGTGCTTTTTTTTGGTGGAGGAGGATGGCTAAATATAGAGAAAGGAA GAGGGAAAGCGAGCGAATCTTATCATCGAGAAGGAAGAAAGGATATCCAATATTCTTCAATGGAAACTTGATCCAAGAGAGCATGAACCAAGTTAAATTT CAAGAACTACCACTATTCAAATTACAAATGCTGATAGCTGCAACAGACTACTTTGATGCTGCCAACAAGCTTGGGGAGGGTGGTTTTGGGCCAGTGTACA GGGGAAATCTGCCAGATGGGCAAGAAATAGCGGTGAAAAGACTGTCAAGAGCATCTGGGCAAGGGCAAGAAGAATTTATGAACGAGGTTGTGGTGATTTC TGAACTCCAACACAAGAATCTTGTGAGACTTCTTGGTTGCTGTGTTGAAGGAGATGAAAAGATGCTGGTCTATGAATACATGCCAAATAAAAGCTTGGAT GCATCTCTCTTTGATCCAGTTAGAAAAGAAGTTCTAGACTGGAAAAAACGCTTCAACATTGTCGATGGAATTTGTCGAGGTCTCCTTTACCTTCACAGAG ATTCCAGACTAAGAATTATTCATAGAGATCTGAAGCCAAGTAACATCTTGTTGGACCAAGAACTAAATCCAAAAATTTCAGACTTTGGGATGGCTAGGAT ATTTGGAGGCAATGAAGATCATGTTAAAACGAGAAGGGTTGTAGGAACCTATGGCTATATGTCCCCTGAATACGCAATGCATGGGAGATTTTCAGAGAAA TCAGATGTTTTCAGCTTTGGAGTCTTGCTGTTAGAGATTGTGAGTGGAAGAAGAAGTACTAAAATTGATGGCAATGAACAGGGTTTGAACCTTTTGGAAT TTGCATGGAAACTGTGGAATGAAGGGAACGCTCCAGCTCTAGTCGATCCTGCATTAACATTAGATCAATATTCCAAGGTGGAAATTTTTAGATGCATACA TGTAGGTTTGCTGTGTGTTCAGGAATTCGCAAAAGATAGGCCAGCTATCTCTACCATCATTTCAATGCTAAATAGTGAAATCGTGGATCTTCCTCTTCCT AACAACCCAGCATACACAGAAAGGCTTATTGGTTTACATACAGAGAGGAGGGGAGACTCCATAAACTTTGTTTCAACTACACTTTTCACTGGCCGATAA
AA sequence Show only first row Show all	>Potri.011G039000.2 pacid=42781268 polypeptide=Potri.011G039000.2.p locus=Potri.011G039000 ID=Potri.011G039000.2.v4.1 annot-version=v4.1 MEIGSCIFMAALRLLLCCFCWQLGAAVDTITSSQYIKDPEAVVSAGNKFKLGFFSPGNSTNRYVGIWYSNISVTTPVWIANRNKPLNDSSGIMTISEDGN IVVLDGRKEILWSSNVSNGVSNSSAQLTDDGNVILRGGEIGNSLWQSFQEPSDTFMLKMRLTANRRTGKKTQITSWKSPSDPSVGSFSSGIEPSSIPEVF VWNDSRPFWRSGPWNGQAFIGIPEMNSVYLNGYNLVQDGDGTFSLSVGLANESYITNFALSYEGRFGEMYWDSANERWEHKKQYPGDDCDIYGKCGPFGF CNTQNSLICRCLKGFEPKNSDEWNRRNWTNGCVRRRELKCERTQSDGQVPKEDEFLKLDKVKVPDFSEWSSSASEQNCKDECLNNCSCIAYSYHTGIGCM LWRGKLTDIRKFSSGGANLYVRLADLEFGKNRDMKAVICITVVTGAIIVAVGAFFWWRRMAKYRERKRESERILSSRRKKGYPIFFNGNLIQESMNQVKF QELPLFKLQMLIAATDYFDAANKLGEGGFGPVYRGNLPDGQEIAVKRLSRASGQGQEEFMNEVVVISELQHKNLVRLLGCCVEGDEKMLVYEYMPNKSLD ASLFDPVRKEVLDWKKRFNIVDGICRGLLYLHRDSRLRIIHRDLKPSNILLDQELNPKISDFGMARIFGGNEDHVKTRRVVGTYGYMSPEYAMHGRFSEK SDVFSFGVLLLEIVSGRRSTKIDGNEQGLNLLEFAWKLWNEGNAPALVDPALTLDQYSKVEIFRCIHVGLLCVQEFAKDRPAISTIISMLNSEIVDLPLP NNPAYTERLIGLHTERRGDSINFVSTTLFTGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039000 [exp]	0	1
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Potri.010G077900 [exp]	2.00	0.8838
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G180000 [exp]	3.74	0.8662
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.016G085200 [exp]	6.70	0.8514
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.010G235801 [exp]	7.34	0.8499
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.010G057900 [exp]	7.93	0.8261
					Potri.019G024466 [exp]	10.39	0.8109
AT3G19620			Glycosyl hydrolase family prot...		Potri.001G294700 [exp]	11.40	0.8178
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.008G179500 [exp]	12.00	0.8340
					Potri.004G191742 [exp]	12.96	0.8012
					Potri.018G092600 [exp]	14.14	0.7823

Compare expression of checked genes

Potri.011G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.