Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 822 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 808 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11350 785 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G21390 705 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 701 / 0 S-locus lectin protein kinase family protein (.1) AT1G61370 687 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 665 / 0 ARK3 receptor kinase 3 (.1) AT1G61420 659 / 0 S-locus lectin protein kinase family protein (.1) AT1G11280 658 / 0 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61440 658 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G039300 [exp] 1545 / 0 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 1172 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 1156 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 1101 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027400 [exp] 1026 / 0 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 1023 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037800 [exp] 1010 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027300 [exp] 1005 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038401 [exp] 998 / 0 AT1G11330 826 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007600 [exp] 701 / 0 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 700 / 0 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 664 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018407 [exp] 656 / 0 AT1G61390 732 / 0.0 S-locus lectin protein kinase family protein (.1.2) Lus10037732 [exp] 655 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 649 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018405 [exp] 647 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 645 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 644 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 641 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G039400.1 pacid=42780678 polypeptide=Potri.011G039400.1.p locus=Potri.011G039400 ID=Potri.011G039400.1.v4.1 annot-version=v4.1 ATGGTAGCCCTTCTACTCCTACTGCGTTTTTTTTGTTTGCAACTTGGTGCTGCCACAGATACAATTACTTCATCTCAGTATGTCAAAGATCCTGATGCTA TAGTCTCTGCGGGAAATAAGTTCAAACTGGGATTTTTCAGCCCTGTTAGTTCCACTAATCGCTATGTAGGAATATGGTTCAGTAGTGTTACGCCTATAAC ACCAGTCTGGGTAGCTAACAGAAACAAGCCACTCAACGATTCTTCTGGGGTGATGACAATATCTGGGGATGGAAATCTTGTGGTTTTGAATGGTCAGAAA GAAACTCTTTGGTCATCAATTGTCTCAAAGGGAGTCGGTAATTCAAGTGCACAGCTTATGGATGATGGAAACCTTGTCCTGCGAGAAATCGGAAGTGGGA ACAGCTTATGGGAGAGTTTTCAGGAACCTTCTGATACAATCATAACGAACATGAGACTTACTGCTAAAGTAAGAACAGGCGAGAAGACATTGCTATCCTC ATGGAGAAGCCCTTCAGATCCATCCATTGGGACCTTCACTGTTGGAATTAATCCAGTAAGGATACCTCATTGTTTCATTTGGAATCATAGCCATCCAATC TATCGGTCTGGTCCATGGAATGGTCAGGTATTTATTGCTAATCCAGAAATGAATTCAGTTAATAGCAATGGATTTGATATTGTACAAGATGGAAACGGGA CGTTTACCCTAATCTCAAATTCTGCCAACGAATCATATATCGGAAGATATGTTTTGAGTTATGATGGAATTTTTAGTGAACTTTATTGGGATTATGGGAA GGAGGAATGGGTTAATGTGGGGCGAGTTCCAAACGATGAGTGCGATGTCTACGGTAAGTGTGGGTCATTTGGAATCTGTAAAGTAAAGAATTCACCAATT TGCAGTTGTATGAAAGGGTTTGAACCAAAAGATGCAGATAAATGGAATAGTAGAAACTGGACTAGTGGTTGTGTTAGGAGGAGACCTATGCAGTGCGAAA GAATACAATATGGTGGTGAAGCGGGCAAAGAAGATGGATTCTTGAGGCTGCGGACAGTGAAAGCGCCAGACTTTGCTGACTCGTCCTTTGCAGTTTCGGA ACAAACATGTAGAGACAATTGCATGAATAATTCTTCCTGTATAGCTTATGCATATTATACTGGTATACGCTGTATGTTGTGGTGGGAAAACTTAACTGAT ATAAGGAAATTTCCTAGTAGAGGGGCAGATCTTTACGTTCGCCTAGCTTATTCAGAACTTGATAATAGAACTACAAGTATGAAGGTAATTATCGGTTTAA CAGTGGTTGTGGGAGCTATTATCAGCGCAATCTGTGTGTTCTGTATGTGGAGGCGAATTGCTCATTATAGAGAAAGGAAGAAGAGAAGCATGAAGATCTT ACTAGAAGAAAGCATGATGCAAGACGACTTGAACCAAGCTAAACTACCACTTTTAAGTTTACCAAAGCTTGTAGCTGCAACAAACAACTTTGACATTGCC AATAAGCTTGGGCAGGGTGGTTTTGGTCCAGTGTACAAGGGAAGATTGCCAGATGGACAGGAAATAGCTGTGAAGAGACTGTCAAGAGCATCTGGGCAAG GACTAGAAGAATTTATGAATGAGGTTGTGGTGATTTCTAAACTGCAACATAGGAATCTTGTGAGACTCCTTGGTTGCTGTGTTGAAGGAGAAGAGAAGAT GTTGGTCTATGAGTACATGCCAAACAAAAGCTTAGATGCCTTTCTTTTTGATCCTCTCAGGAAACAACTTCTAGATTGGAATAAACGTTTTGACATTGTT GACGGAATCTGTCGAGGTCTGCTCTACCTTCACAGGGATTCCAGACTAAAAATTATTCATCGAGATCTGAAGGCAAGTAACATCCTGCTGGACGAAAATT TGAATCCGAAAATTTCAGACTTTGGTATGGCCAGGATATTTGGTGGCAATGAAGATCAAGCAAACACTATAAGGGTTGTCGGGACATATGGCTATATGTC CCCTGAATATGCAATACAGGGCCGATTTTCAGAGAAATCAGATGTTTTTAGTTTTGGAGTTTTGTTGTTGGAGATTGCAAGTGGGAGGAAAAATACCAGT TTCTATGACTGTGAACAAGTTTCGAGCCTGATAGGATTTGCATGGAAATCATGGAATGAGGGCAACATTGGAGCTATAGTAGATCCTGTAATTTCAAACC CTTCTTTTGAGGTTGAAGTTTTTCGGTGCATAAATATTGGTCTGTTATGCGTTCAGGAGCTTGCAAGAGATAGACCAACTATATCTACAGTAATTTCAAT GCTAAACAGCGAAATTGTGGATCTTCCTGCTCCCAAACAATCAGCATTCGCTGAAAGGTTCAGTTATTTAGACAAAGAATCCTCCGAACAGAACAAACAG AGATATTCTATTAACAATGTCTCGATCACAGCACTTGAAGCTCGATAA
AA sequence Show only first row Show all	>Potri.011G039400.1 pacid=42780678 polypeptide=Potri.011G039400.1.p locus=Potri.011G039400 ID=Potri.011G039400.1.v4.1 annot-version=v4.1 MVALLLLLRFFCLQLGAATDTITSSQYVKDPDAIVSAGNKFKLGFFSPVSSTNRYVGIWFSSVTPITPVWVANRNKPLNDSSGVMTISGDGNLVVLNGQK ETLWSSIVSKGVGNSSAQLMDDGNLVLREIGSGNSLWESFQEPSDTIITNMRLTAKVRTGEKTLLSSWRSPSDPSIGTFTVGINPVRIPHCFIWNHSHPI YRSGPWNGQVFIANPEMNSVNSNGFDIVQDGNGTFTLISNSANESYIGRYVLSYDGIFSELYWDYGKEEWVNVGRVPNDECDVYGKCGSFGICKVKNSPI CSCMKGFEPKDADKWNSRNWTSGCVRRRPMQCERIQYGGEAGKEDGFLRLRTVKAPDFADSSFAVSEQTCRDNCMNNSSCIAYAYYTGIRCMLWWENLTD IRKFPSRGADLYVRLAYSELDNRTTSMKVIIGLTVVVGAIISAICVFCMWRRIAHYRERKKRSMKILLEESMMQDDLNQAKLPLLSLPKLVAATNNFDIA NKLGQGGFGPVYKGRLPDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLLGCCVEGEEKMLVYEYMPNKSLDAFLFDPLRKQLLDWNKRFDIV DGICRGLLYLHRDSRLKIIHRDLKASNILLDENLNPKISDFGMARIFGGNEDQANTIRVVGTYGYMSPEYAIQGRFSEKSDVFSFGVLLLEIASGRKNTS FYDCEQVSSLIGFAWKSWNEGNIGAIVDPVISNPSFEVEVFRCINIGLLCVQELARDRPTISTVISMLNSEIVDLPAPKQSAFAERFSYLDKESSEQNKQ RYSINNVSITALEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039300 [exp]	1.00	0.9795
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040600 [exp]	1.41	0.9711
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Potri.002G121200 [exp]	3.46	0.9646	Pt-IFS1.43
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.003G003400 [exp]	4.00	0.9601
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Potri.009G019200 [exp]	4.24	0.9484
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022500 [exp]	4.47	0.9560
AT5G63520			unknown protein		Potri.004G005700 [exp]	5.19	0.9577
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117927 [exp]	5.47	0.9650
AT5G66580			unknown protein		Potri.018G143700 [exp]	5.47	0.9416
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040700 [exp]	6.92	0.9551

Compare expression of checked genes

Potri.011G039400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.