Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27280 127 / 5e-39 Calcium-binding EF-hand family protein (.1) AT5G54490 125 / 1e-38 PBP1 pinoid-binding protein 1 (.1) AT2G46600 120 / 4e-36 Calcium-binding EF-hand family protein (.1) AT3G50360 52 / 2e-09 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT4G14640 49 / 3e-08 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT1G66410 49 / 4e-08 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 49 / 4e-08 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT5G21274 48 / 6e-08 ACAM-6, CAM6 calmodulin 6 (.1) AT3G43810 47 / 1e-07 CAM7 calmodulin 7 (.1) AT2G27030 46 / 2e-07 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G039600 [exp] 225 / 3e-78 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.004G027200 [exp] 207 / 5e-71 AT5G54490 127 / 3e-39 pinoid-binding protein 1 (.1) Potri.001G414600 [exp] 149 / 6e-48 AT5G54490 118 / 1e-35 pinoid-binding protein 1 (.1) Potri.011G125300 [exp] 145 / 1e-46 AT5G54490 122 / 5e-37 pinoid-binding protein 1 (.1) Potri.011G129100 [exp] 143 / 1e-45 AT4G27280 124 / 5e-38 Calcium-binding EF-hand family protein (.1) Potri.013G151000 [exp] 143 / 2e-45 AT5G54490 147 / 7e-47 pinoid-binding protein 1 (.1) Potri.019G120600 [exp] 133 / 1e-41 AT5G54490 147 / 6e-47 pinoid-binding protein 1 (.1) Potri.001G412077 [exp] 132 / 3e-41 AT4G27280 117 / 4e-35 Calcium-binding EF-hand family protein (.1) Potri.002G174900 [exp] 127 / 1e-38 AT2G46600 174 / 4e-57 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018511 [exp] 142 / 5e-45 AT4G27280 140 / 2e-44 Calcium-binding EF-hand family protein (.1) Lus10039724 [exp] 140 / 3e-44 AT4G27280 139 / 1e-43 Calcium-binding EF-hand family protein (.1) Lus10033753 [exp] 137 / 3e-43 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10031588 [exp] 137 / 3e-43 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10005985 [exp] 120 / 1e-36 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10030227 [exp] 120 / 1e-36 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10036734 [exp] 114 / 2e-34 AT5G54490 107 / 2e-31 pinoid-binding protein 1 (.1) Lus10022589 [exp] 49 / 7e-08 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10039391 [exp] 48 / 7e-08 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10041179 [exp] 47 / 8e-08 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.011G039500.1 pacid=42781668 polypeptide=Potri.011G039500.1.p locus=Potri.011G039500 ID=Potri.011G039500.1.v4.1 annot-version=v4.1 ATGGCGTCGCGAAATGGGATTGTGTTCGAGGATTTCTTTCCCGCCATGGTGGAGAAGTTAGGCGCTGAAGGGTTTATGAAGGAGTTGTCCAATGGGTTTC AGTTGTTGGTTGATGAAGACAAGGGTTTGATCACATTTGAGAGTTTGAAGAGGAATTCAGCATTGCTTGGATTGCAGGATATGAGTGATGATGAAGTAAA GTGTATGGTAAGAGAAGGTGATTTGGATGGAGATGGTGCTTTGAATGAGATGGAATTTTGTACACTTATGTTCAGGCTGAGTCCTGGGTTGATGATGAAT TCCACAGAATGGCTCGTAGAGGCTATTATTAGTGAGATGTAG
AA sequence Show only first row Show all	>Potri.011G039500.1 pacid=42781668 polypeptide=Potri.011G039500.1.p locus=Potri.011G039500 ID=Potri.011G039500.1.v4.1 annot-version=v4.1 MASRNGIVFEDFFPAMVEKLGAEGFMKELSNGFQLLVDEDKGLITFESLKRNSALLGLQDMSDDEVKCMVREGDLDGDGALNEMEFCTLMFRLSPGLMMN STEWLVEAIISEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27280			Calcium-binding EF-hand family...		Potri.011G039500 [exp]	0	1
AT4G27280			Calcium-binding EF-hand family...		Potri.011G039600 [exp]	1.00	0.9536
AT5G35110			unknown protein		Potri.018G113700 [exp]	2.82	0.7666
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Potri.001G189700 [exp]	13.26	0.6527
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.013G085201 [exp]	13.71	0.6770
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.007G055800 [exp]	24.55	0.5647
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Potri.009G141400 [exp]	31.19	0.6530
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Potri.005G187900 [exp]	37.29	0.6264
AT5G17680			disease resistance protein (TI...		Potri.017G104901 [exp]	42.14	0.6279
AT1G29690		CAD1	constitutively activated cell ...		Potri.011G075500 [exp]	44.66	0.6215
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Potri.006G232100 [exp]	46.63	0.6075

Compare expression of checked genes

Potri.011G039500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.