Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61620 462 / 1e-165 phosphoinositide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026800 [exp] 529 / 0 AT1G61620 461 / 4e-165 phosphoinositide binding (.1) Potri.001G082200 [exp] 42 / 0.0002 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.003G148300 [exp] 41 / 0.0005 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018409 [exp] 468 / 7e-168 AT1G61620 459 / 3e-164 phosphoinositide binding (.1) Lus10002584 [exp] 468 / 7e-168 AT1G61620 459 / 2e-164 phosphoinositide binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04641 [poplar] [flax] Rtf2 Rtf2 RING-finger CL0229 [poplar] [flax] RING PF15906 [poplar] [flax] zf-NOSIP Zinc-finger of nitric oxide synthase-interacting protein
Representative CDS sequence Show only first row Show all	>Potri.011G040000.1 pacid=42781224 polypeptide=Potri.011G040000.1.p locus=Potri.011G040000 ID=Potri.011G040000.1.v4.1 annot-version=v4.1 ATGCCGCAAAGACACTCAAAAAACAACAACGATTTAGCTTTTTTCACGTACGATGAGAAGAGAAAGTTAGGGTATGGGACACAAAAGGAGAGGCTTGGAA AGGATTCGATCAAGCCATTTGATGCTTGTTGTCTCTGCTTGAAACCATTTATAGATCCAATGTCTTGTCAAAAAGGTCATGTCTTTTGTAAAGAGTGCAT CTTAGAATGCCTCTTAGCCCAAAAGAAAGACATTCAAAGGAAGCTAGCTTCCCATGAATTGCAGAAGAAACAGGAAAAGGAGGAGGAAGCAGAGAAATTG ATGTCGCAGAAGGCCAGAGAGCTTGATGCATTTGATCAGCAAAATCATGGTGCAGTTCCACAGTACAGCGATAGAAACCACAGCCAAGACAAGAACGGTT TCCATGGGGCAAACAGTGTGAAGGTCACTTCGTATGAAGAGGAAGCTCTCCGGACGATGAAAGCATTTTGGCTGCCCTCAGCCACGCCAGTCGCTCCGGT TAAAGTGGATGCCCCTTCCACAAGCACTGTCTGCCCAGAAGGCAAGGAAAAGCTCAAGCTGAAGAGCCTGTTCCCAGTCTACTTCACAGAAGACACCAGT GAAAAGAAATCATCCAGTTCTCTTGATAAGACCTTCATTTGTCCTAGCTGCAAGGTTACTCTCACCAATACACTCTCACTGGTGGCATTAAGTTCTTGTG GTCATGTCTTCTGCAAGAAGTGCGCTGACAAATTTATGGCTGTTGATAAGGTTTGTCTGGCTTGCGGTAAGGGTTGTAAAGAGCGCAATTTGGTGAACTT GGAAAAAGGTGGAACAGGGTTTGCTGGCCACGATGATCACCTTGTGGCAACAGACTTCAAGCATTTGGGTAGTGGTTCAGGATTGGGACTTGTGAGACCA GCCACGAAAACTTAA
AA sequence Show only first row Show all	>Potri.011G040000.1 pacid=42781224 polypeptide=Potri.011G040000.1.p locus=Potri.011G040000 ID=Potri.011G040000.1.v4.1 annot-version=v4.1 MPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACCLCLKPFIDPMSCQKGHVFCKECILECLLAQKKDIQRKLASHELQKKQEKEEEAEKL MSQKARELDAFDQQNHGAVPQYSDRNHSQDKNGFHGANSVKVTSYEEEALRTMKAFWLPSATPVAPVKVDAPSTSTVCPEGKEKLKLKSLFPVYFTEDTS EKKSSSSLDKTFICPSCKVTLTNTLSLVALSSCGHVFCKKCADKFMAVDKVCLACGKGCKERNLVNLEKGGTGFAGHDDHLVATDFKHLGSGSGLGLVRP ATKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61620			phosphoinositide binding (.1)		Potri.011G040000 [exp]	0	1
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065300 [exp]	2.64	0.7984
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.010G164200 [exp]	3.16	0.7728	ATS9.1
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.016G028000 [exp]	5.29	0.7370	RPT1.2
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	8.94	0.7398	RPT5.2
AT5G10780			unknown protein		Potri.006G266300 [exp]	9.16	0.7379
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Potri.016G087900 [exp]	10.95	0.7476
AT5G06770	C3HZnF		KH domain-containing protein /...		Potri.003G213200 [exp]	11.61	0.7162
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.016G091200 [exp]	12.84	0.7021
AT3G18940			clast3-related (.1)		Potri.004G148700 [exp]	12.84	0.7133
AT5G54880			DTW domain-containing protein ...		Potri.001G423900 [exp]	15.96	0.6975

Compare expression of checked genes

Potri.011G040000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.