Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11380 280 / 2e-95 PLAC8 family protein (.1) AT5G05350 67 / 2e-12 PLAC8 family protein (.1) AT1G52200 56 / 2e-09 PLAC8 family protein (.1) AT2G40935 54 / 7e-09 PLAC8 family protein (.1.2.3) AT1G14880 53 / 2e-08 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT1G14870 52 / 2e-08 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT3G18450 52 / 4e-08 PLAC8 family protein (.1) AT3G10980 53 / 1e-07 SAG20, WI12, ATWI-12 PLAC8 family protein (.1) AT3G18470 49 / 2e-07 PLAC8 family protein (.1) AT2G45010 49 / 5e-07 PLAC8 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026700 [exp] 389 / 5e-138 AT1G11380 253 / 8e-85 PLAC8 family protein (.1) Potri.016G129700 [exp] 63 / 4e-11 AT3G10980 619 / 0.0 PLAC8 family protein (.1) Potri.002G141600 [exp] 56 / 5e-09 AT2G45010 303 / 6e-105 PLAC8 family protein (.1.2) Potri.010G182100 [exp] 56 / 7e-09 AT3G10980 670 / 0.0 PLAC8 family protein (.1) Potri.008G132900 [exp] 54 / 1e-08 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G075300 [exp] 54 / 4e-08 AT3G10980 595 / 0.0 PLAC8 family protein (.1) Potri.010G108800 [exp] 52 / 6e-08 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.006G024900 [exp] 48 / 1e-06 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.008G132775 [exp] 48 / 1e-06 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002586 [exp] 287 / 4e-98 AT1G11380 273 / 1e-92 PLAC8 family protein (.1) Lus10018410 [exp] 286 / 6e-98 AT1G11380 270 / 1e-91 PLAC8 family protein (.1) Lus10001260 [exp] 68 / 9e-13 AT5G05350 584 / 0.0 PLAC8 family protein (.1) Lus10012212 [exp] 65 / 9e-12 AT3G10980 592 / 0.0 PLAC8 family protein (.1) Lus10019478 [exp] 55 / 4e-09 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 54 / 1e-08 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10027214 [exp] 50 / 5e-07 AT2G45010 336 / 1e-117 PLAC8 family protein (.1.2) Lus10038926 [exp] 48 / 2e-06 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10028184 [exp] 48 / 2e-06 AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2) Lus10042885 [exp] 48 / 2e-06 AT2G45010 323 / 1e-112 PLAC8 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [poplar] [flax] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Potri.011G040100.1 pacid=42782232 polypeptide=Potri.011G040100.1.p locus=Potri.011G040100 ID=Potri.011G040100.1.v4.1 annot-version=v4.1 ATGGGGGATTTGGAAAAGCAAGTGGTGGTGAATGGAGGGAAGGAGGAGGCAGAGGAAGAGGAGAAGCTGTTAATGGAAGGGATGAGTGTTTTGGATTTTG ATATGTTGTGTTCTACCGTGGCTATGCAAACACAAGGCAAATATTGGGCCAAACTTGAAAGCAATGAAGAAGAAGACGATGATTTGAATCGTTACAATAA TGGAGGTGGTGGTGGTGGTTTCAGGATGTGGGAAGGTGAAGTTCTTGATTGCTTTGATGACCGCCGCATTGCCATCGAATCTCTTTGCTGTCCATGCTAT AGATTTGGAAAGAACATGAGACGAGCTGGTTTTGGTTCTTGTTTTCTTCAGGGAATTGCATATTACATTCTTGGTCTTGGCGCCCTGCTCAACTTCATTG CCTTTATTGTGACGAAGCGAAGCCGCTTTCTGTACTTGTCAATTGTTTTTACCTTCTCATTAGGAATATATTTGGGTTTCTTCCGCACACAGATGAGAAA GAAATTTAATATCAGGGGTAGTGATAGTTCCTTGGATGATTGCATCTACCATCTGATCTGCCCATGCTGCACATTATCCCAGGAATCCAGGACATTGGAG ATGAACAATGTCCAAGATGGTACCTGGCATGGCCGGGGAGACACTATATGTGTGGGTAGTTATAGTGAAGGAAACAAAGTGTTCCTGGAGCTGCACCCAC CTCCCGCTGTCACAACCAGCTCCCCTGATGTTTGCAGCATGCAAAAAAATACCAATGTCAGTGACCAACCTTCGACTTGA
AA sequence Show only first row Show all	>Potri.011G040100.1 pacid=42782232 polypeptide=Potri.011G040100.1.p locus=Potri.011G040100 ID=Potri.011G040100.1.v4.1 annot-version=v4.1 MGDLEKQVVVNGGKEEAEEEEKLLMEGMSVLDFDMLCSTVAMQTQGKYWAKLESNEEEDDDLNRYNNGGGGGGFRMWEGEVLDCFDDRRIAIESLCCPCY RFGKNMRRAGFGSCFLQGIAYYILGLGALLNFIAFIVTKRSRFLYLSIVFTFSLGIYLGFFRTQMRKKFNIRGSDSSLDDCIYHLICPCCTLSQESRTLE MNNVQDGTWHGRGDTICVGSYSEGNKVFLELHPPPAVTTSSPDVCSMQKNTNVSDQPST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11380			PLAC8 family protein (.1)		Potri.011G040100 [exp]	0	1
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.010G104500 [exp]	1.00	0.8775
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Potri.001G220800 [exp]	3.46	0.8304
AT5G13980			Glycosyl hydrolase family 38 p...		Potri.014G143600 [exp]	8.48	0.8213
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Potri.009G072900 [exp]	18.33	0.8155	Pt-AS1.3
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.001G190300 [exp]	22.13	0.8063
AT4G35090		CAT2	catalase 2 (.1.2)		Potri.005G251600 [exp]	25.19	0.7457	CAT3,Pt-CAT1.5
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.003G224000 [exp]	28.91	0.7597
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.011G022800 [exp]	35.72	0.7784
AT2G17020			F-box/RNI-like superfamily pro...		Potri.004G179571 [exp]	35.94	0.7851
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G080066 [exp]	36.66	0.8032

Compare expression of checked genes

Potri.011G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.