Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03270 178 / 9e-55 CYCD6;1 Cyclin D6;1 (.1) AT5G65420 130 / 3e-36 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT1G70210 124 / 2e-33 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT2G22490 116 / 2e-30 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G10440 113 / 1e-29 CYCD4;2 cyclin d4;2 (.1) AT4G34160 108 / 2e-27 CYCD3;1 CYCLIN D3;1 (.1) AT5G67260 101 / 7e-25 CYCD3;2 CYCLIN D3;2 (.1) AT3G50070 100 / 2e-24 CYCD3;3 CYCLIN D3;3 (.1) AT4G37630 77 / 2e-16 CYCD5;1 cyclin d5;1 (.1.2) AT5G02110 57 / 4e-09 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032100 [exp] 362 / 7e-127 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.011G040900 [exp] 345 / 5e-120 AT4G03270 213 / 1e-67 Cyclin D6;1 (.1) Potri.019G118600 [exp] 252 / 3e-83 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1) Potri.013G149000 [exp] 246 / 2e-81 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1) Potri.002G103500 [exp] 138 / 8e-39 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 132 / 6e-37 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.008G146600 [exp] 128 / 2e-35 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 120 / 5e-32 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.007G055300 [exp] 117 / 4e-31 AT4G37630 198 / 3e-61 cyclin d5;1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018411 [exp] 204 / 8e-65 AT4G03270 152 / 4e-44 Cyclin D6;1 (.1) Lus10002587 [exp] 204 / 8e-65 AT4G03270 169 / 8e-51 Cyclin D6;1 (.1) Lus10039738 [exp] 199 / 5e-62 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1) Lus10033736 [exp] 192 / 2e-59 AT4G03270 221 / 5e-70 Cyclin D6;1 (.1) Lus10031608 [exp] 166 / 3e-49 AT4G03270 211 / 4e-66 Cyclin D6;1 (.1) Lus10010709 [exp] 132 / 1e-36 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10029194 [exp] 132 / 1e-36 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10018520 [exp] 131 / 2e-36 AT4G03270 163 / 4e-48 Cyclin D6;1 (.1) Lus10027874 [exp] 94 / 6e-22 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10019317 [exp] 93 / 8e-22 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G040500.2 pacid=42782020 polypeptide=Potri.011G040500.2.p locus=Potri.011G040500 ID=Potri.011G040500.2.v4.1 annot-version=v4.1 ATGAAGTTAGATCTTGAAAACCCGTTGACAAGCTCGGAAGAACACCAATCTGATACGATCACATATCTCTTTGCCTCTGAATTTGATCACATGCCTTCAA GAAATCTACTAAACTTCTTGGAAACATGTGATCACTTCTACGTCTCCTTTCGTCATGAAGCCATTTCCCTCATTTTACAGGCACAATATTCCTGCAACTG TGGCCCCTTTATACCCTACCTTGCAGTTAATTTCATGGATCGATTCATTTCCAGGATGGAAATTCCGCAAGGAAAGCCATGGATTCTTAGACTTGTGGTA GTCTCTTGCCTTTCCCTAGCTGCAAAGATGGAGAACACAGACTTCTCCATCTCTAATTTTCAGGGAGACGAAGCTGGTTTCATCTTTGACAACAAAACAA TTAACCGAATGGAACTTCTCATCCTTGATACCTTGGATTGGAGAATGAGATCGATCACACCTTTCTCTTTTGTGCATTTCTTCATTTCATTATCGCAGCT TAAAGATCCAGCATTGACTCAAACTCTCAAGGACCGAGCTACGGAGATTATTTTTAAAGCTCAAAATGAAATTAAGTTACTCAAGTTCAAGCCATCTATT ATTGCAGCATCAGCCCTTCTTGTAGCATCCAAAGAACTACTCCCATTGCAGTTCCCTTCTTTCAAGTTCTCAATCTCCGCTTTTGAATGTGTGAAAGAAG AGAATCTGCTTAATTGCTTTGATACACTGCAAGAAATGGTGGAGAACGAAAATGGCACGAGGCAATGTTAG
AA sequence Show only first row Show all	>Potri.011G040500.2 pacid=42782020 polypeptide=Potri.011G040500.2.p locus=Potri.011G040500 ID=Potri.011G040500.2.v4.1 annot-version=v4.1 MKLDLENPLTSSEEHQSDTITYLFASEFDHMPSRNLLNFLETCDHFYVSFRHEAISLILQAQYSCNCGPFIPYLAVNFMDRFISRMEIPQGKPWILRLVV VSCLSLAAKMENTDFSISNFQGDEAGFIFDNKTINRMELLILDTLDWRMRSITPFSFVHFFISLSQLKDPALTQTLKDRATEIIFKAQNEIKLLKFKPSI IAASALLVASKELLPLQFPSFKFSISAFECVKEENLLNCFDTLQEMVENENGTRQC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.011G040500 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Potri.005G095600 [exp]	1.00	0.8657
AT2G31945			unknown protein		Potri.003G215300 [exp]	3.87	0.7970
AT1G16040			unknown protein		Potri.003G184701 [exp]	4.89	0.7684
AT5G66390			Peroxidase superfamily protein...		Potri.005G118700 [exp]	6.92	0.7795
AT4G29560			unknown protein		Potri.006G151500 [exp]	8.48	0.7333
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.006G068300 [exp]	9.48	0.7153
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003600 [exp]	9.79	0.7530
					Potri.017G063200 [exp]	10.09	0.7090
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.004G141900 [exp]	14.07	0.7603
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Potri.006G053400 [exp]	16.00	0.6601	AGK2.1

Compare expression of checked genes

Potri.011G040500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.