Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45500 309 / 8e-93 RNI-like superfamily protein (.1.2) AT5G45520 241 / 2e-66 Leucine-rich repeat (LRR) family protein (.1) AT3G50950 119 / 3e-27 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58602 76 / 1e-13 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G58400 72 / 1e-12 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 72 / 2e-12 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59124 71 / 2e-12 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 68 / 2e-11 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58848 63 / 1e-09 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 63 / 1e-09 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G036900 [exp] 281 / 4e-83 AT5G45500 202 / 2e-55 RNI-like superfamily protein (.1.2) Potri.005G119800 [exp] 150 / 3e-37 AT3G50950 1005 / 0.0 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.011G129800 [exp] 134 / 6e-32 AT3G50950 493 / 7e-163 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.016G092600 [exp] 96 / 7e-20 AT3G50950 483 / 4e-158 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.003G201900 [exp] 85 / 2e-16 AT3G14470 567 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 84 / 3e-16 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 84 / 4e-16 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 81 / 2e-15 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.006G272066 [exp] 81 / 2e-15 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008584 [exp] 92 / 7e-19 AT3G14470 186 / 2e-49 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 76 / 8e-14 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10011278 [exp] 75 / 2e-13 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 74 / 4e-13 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 74 / 5e-13 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 72 / 2e-12 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10040210 [exp] 64 / 3e-12 AT3G14460 67 / 4e-14 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10041243 [exp] 69 / 1e-11 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 68 / 3e-11 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 67 / 5e-11 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G040700.1 pacid=42781177 polypeptide=Potri.011G040700.1.p locus=Potri.011G040700 ID=Potri.011G040700.1.v4.1 annot-version=v4.1 ATGTCATCTGTTGATAGCTCTAGAGATGCATTAACCATTCAACAAATTATCGCCTCAATTCCGGCTTTGATTGATCTTGTTTCCGTTGCCAAGTCATCAA TTCCTTTGCCCCTAAAATTAAATACCGATAACACAATCACCACCACCACTCTTGAGGCTGCCGCTGTCACCACCACCACCAGCAACGTTAATGACAACAA TATTAGCAGTATCACCACCACTTCCATATCCACACCAGGAAACAGTAATAATACTGCAGCTGCCACAGAAACCGCCACCTCCCCCTCCACCTCCACCTCC ACCTCTGGCCCGGCTCCTTCTCTGGCCTCTATCCTTGACTCCGGCTCCGGCTCCACCATCACCACCACAACTACTGAAGGCGGCAGCAACAGCGACGGCA ACACCACAACCAGCAATTATGCTAATATCGAGGACGTGATCAGTGATGGGAGCTGTTGTATGTTGGGATTTTCCAGCAATAATCCAAGTGATGAGAATAA GAAGAAAGACAAGAACATCACGGCCGATGTTGGCAATGATGGCAGTGTGAATCCTGAAGGTGAAAGCAACCAAAAACTGCATAATCAGTTGGAGAAATTG ACCAGAGATTTATATTATGTTCAAAGCGCCTGTGACAAACTCAAACATCTAGAACTACATGTTGGTAACCAATTCAAGAGTCTTCAAAGACAAGGTGTAT TCCTACAGAGTGTCTTAAGGAATTTAGAACGAGTACGAAATGGCACCACCAGTAATCATGCCATCCTAACCAAGCAAATGCAACTTAACATTAAGTTAAT TGCTGGGATGGTAATGGAGTTGAAGTATCACATACCGTCACCATACAAGCTGAATTTGGCCAATGAAGTACTCAAGTCGCAAAATGTTAGTGGGGGAGAT TCCCTGAATTTGATCGATGAGATTCTTAAAATACGCGGTAACAAAGCATTTGAAGGGTGTTCATCTTTTGTAGATTTTAAAGAGAGATATAGCAGTCTTG ATTTAAGAGATAAGCTTTGTTTGTTGTGTTTCTCGGTGTTTCCGGAGAATTCTGTTGTCAAGAAGAGATTGCTGATGTATTGGTGGGTTGGAGAGGGTTT CATAGACCCAAAAGTTGATGCTGACAAGCCTGAGGAAGTTGCTGATGGCATTTTGAAGAAATTCTTGGAGAAAGGGTTTGTTGAGCCTGAGATCAAGAAA CGTAGACTGGTTGGGTTCAGGATGCACTCATTGATTCGTTATGCGGTTATTTTTGTAGCTGAAAAAGTGGGGTTCTTCCATTTTGATTCAATGGGGAATC CCACGGGGAACTTTTCAACTAGTCAGAGGGCTTGTTTGATCAAAACTGGAGAGAAATATTCTCGGCAGGCGTTGCTTGATTTGGAGTCGAAACCAGAGAC ACTGCACGCTTTGTTCAATGTCAACGATCCTTATCCAGATTTAAACACAGAATGGTTCTCCAGGATGAGAAACATTAATGTTCTTTGCTTGGGAAGGTGG GAGAACTCATCTAAGAAGAACAATGAAGCAGAGAACAATGAAGCAGAGGAGACCAGGCATGATGTTGAAGTGGAGAGCACCGAATTCTTGAAGGGGCTGA GGCAGCAGCATCATGTTGAAGTGGAGAGCACCGAATTCTTGAAGGGGTTGAGGAACATGAAGCATCTGAAGTTTCTCAGTCTTCAAGGAATCTCTAGGAT CAACGAGCTTCCTGAAACCATCCAGAAGCTTGTCAATCTAAAGATTTTGGATCTTAATTCTTGCCACAATCTGGAGGCAATTCCAGAGAATATTGTGTCA CTCCAGAAGCTGACACACTTGGACATTTCTGAGTGCTACATGCTGGATTACATGCCCAAGGGGCTTGGGTCACTTACTGAACTCCAAGTCCTTAAGGGGT TTGTAATTAGTAATCTGAAAATAAAAAATGCAGGAACTCTTGATGATTTAAGAGGATTGCCAAAGTTGAGGAAACTGAGCATCTATACAACTAAGAAAGA TTTCCCTAGAGTTAAAGACCTGAAAGCGCTAAGGCATATCACAGCGCTTCAGAAGCTAACAATTGAATGGGGAGGGAAATCCGGAGTCAAAAAAGAGGAA ATTAGAAATGACTCAAGAGGACTGACAAGGAGCAATGCCTTTAGACGAGAGAACATCCCTGCAGCGATTCCTGACCTTCCTGAACATTTGGTGAAGCTGG ATCTTCAGTGTTACCCTGAGACTAAGGCTCCTGAGTGGCTGTTACCTCTCAGACTGAAAAATCTTCAGAAACTCTACATCAGAGGTGGGCATCTCAGTGC TCTGGGTCAAGCTCAGGGTGGAAATCACAAGTGGAATGTCAAGATACTGCGTCTCAAATTTTTGAAAGAACTAAAGATGGATTGGAGAGTACTGCATGAT GCATTTCCGCATTTGATTTACTTGGAGAAATTTAAATGTCCTAAACTGACTTTCTTCCCTTGTGATGGCACCGGAGTGTGGCTGGACAGAGAAAAGCTAG CAAACCAGACGTTGGAAGAATTAGAATTGACATGGTCTTTCCTTTCCAAAAGTTCTACTTGA
AA sequence Show only first row Show all	>Potri.011G040700.1 pacid=42781177 polypeptide=Potri.011G040700.1.p locus=Potri.011G040700 ID=Potri.011G040700.1.v4.1 annot-version=v4.1 MSSVDSSRDALTIQQIIASIPALIDLVSVAKSSIPLPLKLNTDNTITTTTLEAAAVTTTTSNVNDNNISSITTTSISTPGNSNNTAAATETATSPSTSTS TSGPAPSLASILDSGSGSTITTTTTEGGSNSDGNTTTSNYANIEDVISDGSCCMLGFSSNNPSDENKKKDKNITADVGNDGSVNPEGESNQKLHNQLEKL TRDLYYVQSACDKLKHLELHVGNQFKSLQRQGVFLQSVLRNLERVRNGTTSNHAILTKQMQLNIKLIAGMVMELKYHIPSPYKLNLANEVLKSQNVSGGD SLNLIDEILKIRGNKAFEGCSSFVDFKERYSSLDLRDKLCLLCFSVFPENSVVKKRLLMYWWVGEGFIDPKVDADKPEEVADGILKKFLEKGFVEPEIKK RRLVGFRMHSLIRYAVIFVAEKVGFFHFDSMGNPTGNFSTSQRACLIKTGEKYSRQALLDLESKPETLHALFNVNDPYPDLNTEWFSRMRNINVLCLGRW ENSSKKNNEAENNEAEETRHDVEVESTEFLKGLRQQHHVEVESTEFLKGLRNMKHLKFLSLQGISRINELPETIQKLVNLKILDLNSCHNLEAIPENIVS LQKLTHLDISECYMLDYMPKGLGSLTELQVLKGFVISNLKIKNAGTLDDLRGLPKLRKLSIYTTKKDFPRVKDLKALRHITALQKLTIEWGGKSGVKKEE IRNDSRGLTRSNAFRRENIPAAIPDLPEHLVKLDLQCYPETKAPEWLLPLRLKNLQKLYIRGGHLSALGQAQGGNHKWNVKILRLKFLKELKMDWRVLHD AFPHLIYLEKFKCPKLTFFPCDGTGVWLDREKLANQTLEELELTWSFLSKSST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45500			RNI-like superfamily protein (...		Potri.011G040700 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Potri.013G017700 [exp]	2.23	0.8048
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Potri.010G199500 [exp]	5.47	0.7773
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	6.32	0.7715
AT5G25930			Protein kinase family protein ...		Potri.018G088100 [exp]	6.48	0.7328
AT3G63380			ATPase E1-E2 type family prote...		Potri.002G047500 [exp]	6.63	0.8000
AT3G54070			Ankyrin repeat family protein ...		Potri.011G015801 [exp]	8.06	0.7566
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G187800 [exp]	8.36	0.7217
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016300 [exp]	10.58	0.7327
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	11.31	0.7262
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082400 [exp]	21.74	0.7206

Compare expression of checked genes

Potri.011G040700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.