Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03270 213 / 1e-67 CYCD6;1 Cyclin D6;1 (.1) AT1G70210 131 / 9e-36 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 126 / 4e-34 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT2G22490 121 / 1e-31 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G10440 119 / 1e-31 CYCD4;2 cyclin d4;2 (.1) AT4G34160 98 / 4e-23 CYCD3;1 CYCLIN D3;1 (.1) AT3G50070 97 / 1e-22 CYCD3;3 CYCLIN D3;3 (.1) AT5G67260 96 / 4e-22 CYCD3;2 CYCLIN D3;2 (.1) AT4G37630 83 / 5e-18 CYCD5;1 cyclin d5;1 (.1.2) AT5G02110 56 / 1e-08 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032100 [exp] 482 / 2e-173 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.011G040500 [exp] 346 / 2e-120 AT4G03270 178 / 7e-55 Cyclin D6;1 (.1) Potri.013G149000 [exp] 317 / 2e-108 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1) Potri.019G118600 [exp] 316 / 1e-107 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1) Potri.002G103500 [exp] 141 / 3e-39 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.008G146600 [exp] 135 / 4e-37 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.005G157800 [exp] 132 / 2e-36 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.010G095200 [exp] 131 / 1e-35 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.007G055300 [exp] 115 / 2e-29 AT4G37630 198 / 3e-61 cyclin d5;1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039738 [exp] 243 / 2e-78 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1) Lus10033736 [exp] 224 / 2e-71 AT4G03270 221 / 5e-70 Cyclin D6;1 (.1) Lus10002587 [exp] 215 / 2e-68 AT4G03270 169 / 8e-51 Cyclin D6;1 (.1) Lus10018411 [exp] 212 / 2e-67 AT4G03270 152 / 4e-44 Cyclin D6;1 (.1) Lus10031608 [exp] 199 / 2e-61 AT4G03270 211 / 4e-66 Cyclin D6;1 (.1) Lus10018520 [exp] 171 / 4e-51 AT4G03270 163 / 4e-48 Cyclin D6;1 (.1) Lus10029194 [exp] 142 / 5e-40 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 141 / 2e-39 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10014089 [exp] 95 / 8e-22 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10019825 [exp] 94 / 2e-21 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G040900.1 pacid=42781278 polypeptide=Potri.011G040900.1.p locus=Potri.011G040900 ID=Potri.011G040900.1.v4.1 annot-version=v4.1 ATGGAGTTTGATCTTGAAAACCCTTTGACAAGCTTGAAAGAATACGTATCTGATACAATCCCAGATCTCTTTGTCTCTGAATCTGATCACATGCCTTCAA GAAATTTCCTACACTGCTTGAAAACCTCTGACTTCTACGTTTCCTTTCGTGAAGAAGCCATTTCTCGCATTTTACAGGCACAATATTCTTGCAACTATGA CCTCTTCATTCCCTACCTTGCAGTAAATTACATGGATCGATTCATTTCCAGGCAAGAAATTCCGCAAGGGAAGCCATGGATTCTTAGACTTCTAGTAATC TCTTGCCTTTCTCTAGCTGCAAAGATGAAGAATAAACACTTCTCCATCTCCAATTCTCAGGAAGCGGAAGCTGGTTTCATCTTTGACACACAAACAATTA ATCGCATGGAACTTCTCGTTCTTGATGCCTTGAACTGGAGAATGAGATCGATTACACCTTTCTCTTTTGTGCATTTCTTTGTTTCTTTATTTGAACTCAA AGATCCATCATCCTCACAACCTCTCAAAGACAGAGCTACAGAGATTATTTTTAAAGCTCAAAATGAAATTAAGTTTCTTGAGTTCAAGCCATCTATTATT GCAGCATCAGCCCTTCTTGTAGCATCCAATGAACGATTCCCATTGCAATTCCCTTGTTTCAAGTGCTCAATCTACTCATGTGAATTTGTAAATGAAGAGA AGCTGCTAGAATGCTTTAATGCACTGCAAGAAATGGTGGAGATGGAATGGTACGAGTCAATGTTAGATACAATGTCCTGGACAAGAACCCCATTGAGCGT GCTAGACAGGCATTTTACAAAATCAGAAAATGAGACCACGAGCATCATCACCAGCACCACCACCATCACTAATGGCAGTACAGTGCCGGAGATCAAGCGG CGAAAATTGAATGGCTACAGCGGCAAATGA
AA sequence Show only first row Show all	>Potri.011G040900.1 pacid=42781278 polypeptide=Potri.011G040900.1.p locus=Potri.011G040900 ID=Potri.011G040900.1.v4.1 annot-version=v4.1 MEFDLENPLTSLKEYVSDTIPDLFVSESDHMPSRNFLHCLKTSDFYVSFREEAISRILQAQYSCNYDLFIPYLAVNYMDRFISRQEIPQGKPWILRLLVI SCLSLAAKMKNKHFSISNSQEAEAGFIFDTQTINRMELLVLDALNWRMRSITPFSFVHFFVSLFELKDPSSSQPLKDRATEIIFKAQNEIKFLEFKPSII AASALLVASNERFPLQFPCFKCSIYSCEFVNEEKLLECFNALQEMVEMEWYESMLDTMSWTRTPLSVLDRHFTKSENETTSIITSTTTITNGSTVPEIKR RKLNGYSGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.011G040900 [exp]	0	1
AT5G42470			unknown protein		Potri.002G021700 [exp]	3.46	0.6767
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.010G136900 [exp]	3.74	0.6936
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.018G112800 [exp]	7.93	0.6995
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.004G104000 [exp]	8.48	0.6501
AT2G33400			unknown protein		Potri.008G170600 [exp]	9.38	0.6410
AT2G24420			DNA repair ATPase-related (.1....		Potri.006G276900 [exp]	13.07	0.5990
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G019600 [exp]	20.14	0.6436
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	20.71	0.6887
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Potri.013G021700 [exp]	24.73	0.5767
AT4G09750			NAD(P)-binding Rossmann-fold s...		Potri.002G063601 [exp]	27.65	0.6561

Compare expression of checked genes

Potri.011G040900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.