Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 134 / 1e-33 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 131 / 3e-33 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 124 / 8e-31 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 117 / 4e-28 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 116 / 1e-27 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 114 / 7e-27 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 109 / 7e-27 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G70640 106 / 7e-27 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT3G26510 105 / 4e-26 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032200 [exp] 593 / 0 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 139 / 2e-36 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 139 / 2e-36 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 130 / 1e-32 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.002G108800 [exp] 122 / 8e-31 AT5G09620 146 / 3e-39 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 122 / 8e-30 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 122 / 2e-29 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G186500 [exp] 112 / 8e-29 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.006G190200 [exp] 118 / 2e-28 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002588 [exp] 377 / 1e-127 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 363 / 4e-122 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 154 / 8e-42 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 143 / 4e-40 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 126 / 8e-33 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 128 / 1e-32 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10010753 [exp] 117 / 2e-31 AT5G09620 182 / 5e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 123 / 6e-30 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 122 / 2e-29 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10007952 [exp] 117 / 6e-28 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Potri.011G041100.1 pacid=42782138 polypeptide=Potri.011G041100.1.p locus=Potri.011G041100 ID=Potri.011G041100.1.v4.1 annot-version=v4.1 ATGTCATCACTCCATCCATCAGAACTGGACTCAGGCGCTCCAGATTCTGTAGTCTCTTCTCCTCGGCCCGGTTACCACGTGTCGCATGATCCACGTGTGC GCTTCATGTGCAGCTTCGGAGGGAAAATTCTCCCCCGCCCACATGACAATCAGCTCCGATATGTTGGCGGTGACACTCGCATAGTTGCTGTCCACCGCTC TACAACTTTCTCTACTCTCATCACTAAATTATCAAAATTGTCAGGAATTGGTAACTTGAGTGTCAAGTATCAACTACCGAATGAAGATCTTGATGCTTTG ATAACTGTTACTACTGATGAGGATGTTGAGAACATGATGGATGAATATGATCGTATTTTACATAATCAAAATCCACGTTCGGCTCGGCTTAGGCTATTTC TGTTCTCTGCAATAGATGAGTCAAGATCAAGTAGTATTAGTTCACTTCTTGATGGATCAACAAACCGGGAAAACTGGTTTTTTGATGCTCTTAATTCGGG CTCTAGCAGGCTTGAACGTGGAAGGTCTGAGGCTTCTTCAATTGTTTCTGAAGTACCCGATTATCTATTCGGTTTGGAGAATTCAGATGAGGGCAACATT CCTCGTGAACCCAAACTGAAGTCCAGATTCGTTATGAACGATAATGTTTCAGCTTCTGATCCAGATTCTCCTGCCCCGGTTGTTTCTTACCCATATTGCT CAGCTTCATCAGTTATGCCTGCTGTGCCTTCAATTCCGGATCTTCCACCCGTTAAGACCGAACCCGATGACCTAGAGCCAGTAACGGTACGTGTGAAGCG GAATCCAGTTGAGGGTTATTGTGACCCGATTGAGACACCACCAATCACCCAATCACCTGGATATCCAAGCAATCCAAGCAATCCAGTCATGCATTATATT CCGGATTCTCTTTATCAGGGTAGTCCAGTACAGCAAATGCCGGTTTATTATGTTCCAGGTACGATTTCACCACGGAACGTTCCGGTTCATCCCATTCAAA TGCGGGCTCCATATGCTCAACAATATCCGATCCCAACGGAGCAAATGCCGATTGGGTACCACCAAGCTGTTCCAGGTACGGGTCAAGTGTATAGTGGCGT GGCAATGAGGCCCGTTGCAACAAAGGATCGGTATGATGCTACAACAAGAGTGGTTCCAGATGGTATGAATCAACAGGTTTATTATGGAGTTCGTAATGCA AGTTCGGGTATAGTTCAAGGGCATACGGGTATGGTAATTCAGGGCGGGGGAGATTTGAAAAGGACCGCATCCGACACATACCCAAGGAGAATGAATTCTG ACAAAATCTACAAAACAGAAAACATCTAA
AA sequence Show only first row Show all	>Potri.011G041100.1 pacid=42782138 polypeptide=Potri.011G041100.1.p locus=Potri.011G041100 ID=Potri.011G041100.1.v4.1 annot-version=v4.1 MSSLHPSELDSGAPDSVVSSPRPGYHVSHDPRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAVHRSTTFSTLITKLSKLSGIGNLSVKYQLPNEDLDAL ITVTTDEDVENMMDEYDRILHNQNPRSARLRLFLFSAIDESRSSSISSLLDGSTNRENWFFDALNSGSSRLERGRSEASSIVSEVPDYLFGLENSDEGNI PREPKLKSRFVMNDNVSASDPDSPAPVVSYPYCSASSVMPAVPSIPDLPPVKTEPDDLEPVTVRVKRNPVEGYCDPIETPPITQSPGYPSNPSNPVMHYI PDSLYQGSPVQQMPVYYVPGTISPRNVPVHPIQMRAPYAQQYPIPTEQMPIGYHQAVPGTGQVYSGVAMRPVATKDRYDATTRVVPDGMNQQVYYGVRNA SSGIVQGHTGMVIQGGGDLKRTASDTYPRRMNSDKIYKTENI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Potri.011G041100 [exp]	0	1
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.009G027200 [exp]	13.71	0.6436
AT3G30383			Protein of unknown function (D...		Potri.017G039150 [exp]	15.09	0.5937
AT1G16490	MYB	ATMYB58	myb domain protein 58 (.1)		Potri.005G096600 [exp]	16.00	0.6127
AT4G35720			Arabidopsis protein of unknown...		Potri.005G103800 [exp]	18.02	0.5755
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.016G129000 [exp]	27.71	0.5024
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.001G024401 [exp]	30.98	0.5069
AT5G50090			unknown protein		Potri.015G072501 [exp]	32.03	0.5534
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Potri.006G128000 [exp]	59.63	0.5301
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.012G071700 [exp]	60.41	0.4863	CDPK1.3
					Potri.013G104350 [exp]	64.94	0.4973

Compare expression of checked genes

Potri.011G041100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.