Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05120 540 / 0 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05140 519 / 0 Nucleoside transporter family protein (.1) AT4G05110 508 / 1e-179 ATENT6 equilibrative nucleoside transporter 6 (.1) AT4G05130 494 / 4e-174 ATENT4 equilibrative nucleoside transporter 4 (.1) AT1G61630 457 / 2e-159 ATENT7 equilibrative nucleoside transporter 7 (.1) AT3G09990 429 / 2e-148 Nucleoside transporter family protein (.1) AT1G70330 130 / 4e-33 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G02630 123 / 4e-31 Nucleoside transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032300 [exp] 690 / 0 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032400 [exp] 608 / 0 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.019G118400 [exp] 546 / 0 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 482 / 2e-169 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.018G130000 [exp] 120 / 4e-30 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.012G058900 [exp] 119 / 3e-29 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.006G068100 [exp] 114 / 9e-28 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130200 [exp] 61 / 1e-10 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018413 [exp] 573 / 0 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002589 [exp] 570 / 0 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018523 [exp] 509 / 3e-180 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10039741 [exp] 508 / 1e-179 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018414 [exp] 499 / 6e-175 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 398 / 9e-137 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10030104 [exp] 127 / 1e-32 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2) Lus10029162 [exp] 122 / 2e-30 AT1G70330 551 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10013002 [exp] 121 / 4e-30 AT1G70330 534 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10002590 [exp] 99 / 4e-25 AT4G05130 97 / 2e-25 equilibrative nucleoside transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF01733 [poplar] [flax] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Potri.011G041112.1 pacid=42782325 polypeptide=Potri.011G041112.1.p locus=Potri.011G041112 ID=Potri.011G041112.1.v4.1 annot-version=v4.1 ATGCATTCAAAGTGGTTTCTTGAATTAACTTCGGCTACTAGGATTCCAGATTCAAAATCATCAGTGACACCATTATTTTATTGTTCTTCCGTTAAGGGGC TAGCCATGACTATTGCTTATGGAAATCATGCTCCAACTCCAACAAGGCCTGGGGGAAAACATAAAGGGATTATAGTTTGTTGGTTTCTTGGACTTGGCTC TCTTGTCTCATGGAACAGTATGCTGACAATAGGAGATTACTACTATTGTCTGTTCCCAAAATACCACCCTTCAAGGGTACTTACTCTTGTTTATCAACCA TTTGCACTTGGAACAATGGCAATACTAGCTTATAATGAGGCAAAGATCAATACTAGAAAGCGGAACATAGCCGGATACATTCTCTTTGCTGCAAGTACTC TTATGCTCATGGTTGTGGATTTAGCCACATCAGGAGGAGGAGGAATTGGACCTTTTATTGGCATATGTGCAATTGTTGCTGCTTTCGGAGTTGCAGATGC CCATGTTCAAGGTGGAATGGTTGGAGACATGGCTTTCATGTGTCCTGAATTCATGCAGTCTTTCTTTGCTGGGTTGGCTGCATCAGGAGCCCTGACCTAT GCTCTGAGATTGATCACAAAAGCACTGCTATTTCTAGGAATCTCCATTTTCTTGGAATTCCTGTGTGTTCTGCTGTATGCATATCTCTTTCCTAAACTAC CAATAGTGAAGTACTACCGCTCAAAGGCAGCCTCAGAAGGATCAAAGACAGTTTCAGCTGATCTTGCTGCTGCTGGCATCCAAACACCAGCAAACCAAGA ACAGGCTGCTGATGTTGCCAAACCTCCGGAGCGATTGAGCAACAAACAACTACTCTTCCAGAATATAGATTATGCACTTGACCTGTATCTGATATACGTG TTGACATTGTCAATTTTCCCAGGATTCGTATTTGAAAATACTGGTAAACACAAGTTGAGCAACAAATGGTACCCTCTTGTTCTGATTGCAATGTACAATG TGTTGGATCTTATATCAAGATACATTCCCCTTGTTCCAAGTTTGAAATTGGAGTCTAGGAACGGCCTCCTGATTGCAGTACTCTCTCGTTTTCTACTCAT TCCTGCATTCTACTTCACTGCAAAATACGGTGATCAAGGATGGATGATCTTTCTCGTTTCTTTCTTGGGACTGACCAATGGCTATCTCACTGTCTGTGTT CTTACAATTGCACCAAGAGGTTACACGGGGCCTGAAGCAAATGCGTTGGGGAATTTGCTTGTGTTATTCTTATTAGGTGGCATATTTTCAGGGGTTGCCC TTGATTGGCTTTGGCTCATAGGCAAAAAGAAGGCCTTCTAG
AA sequence Show only first row Show all	>Potri.011G041112.1 pacid=42782325 polypeptide=Potri.011G041112.1.p locus=Potri.011G041112 ID=Potri.011G041112.1.v4.1 annot-version=v4.1 MHSKWFLELTSATRIPDSKSSVTPLFYCSSVKGLAMTIAYGNHAPTPTRPGGKHKGIIVCWFLGLGSLVSWNSMLTIGDYYYCLFPKYHPSRVLTLVYQP FALGTMAILAYNEAKINTRKRNIAGYILFAASTLMLMVVDLATSGGGGIGPFIGICAIVAAFGVADAHVQGGMVGDMAFMCPEFMQSFFAGLAASGALTY ALRLITKALLFLGISIFLEFLCVLLYAYLFPKLPIVKYYRSKAASEGSKTVSADLAAAGIQTPANQEQAADVAKPPERLSNKQLLFQNIDYALDLYLIYV LTLSIFPGFVFENTGKHKLSNKWYPLVLIAMYNVLDLISRYIPLVPSLKLESRNGLLIAVLSRFLLIPAFYFTAKYGDQGWMIFLVSFLGLTNGYLTVCV LTIAPRGYTGPEANALGNLLVLFLLGGIFSGVALDWLWLIGKKKAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.011G041112 [exp]	0	1
AT3G62550			Adenine nucleotide alpha hydro...		Potri.014G122000 [exp]	6.92	0.9416
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	8.36	0.9313
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.001G249800 [exp]	8.36	0.9474
AT1G70820			phosphoglucomutase, putative /...		Potri.008G131400 [exp]	13.41	0.9238
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456300 [exp]	14.07	0.9179
AT3G27180			S-adenosyl-L-methionine-depend...		Potri.001G331900 [exp]	22.44	0.9224
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024052 [exp]	22.51	0.9138
AT5G05280			RING/U-box superfamily protein...		Potri.019G130100 [exp]	23.15	0.9217
AT1G76110	ARID		HMG (high mobility group) box ...		Potri.005G246700 [exp]	24.49	0.9163
					Potri.017G079000 [exp]	24.49	0.9058

Compare expression of checked genes

Potri.011G041112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.