Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21430 465 / 3e-148 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) AT4G00990 448 / 6e-143 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 306 / 1e-89 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 286 / 1e-82 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 197 / 6e-52 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT3G07610 182 / 7e-47 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT2G22840 52 / 1e-06 GRF ATGRF1 growth-regulating factor 1 (.1) AT4G37740 52 / 1e-06 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G06200 48 / 1e-05 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G24150 49 / 2e-05 GRF ATGRF8 growth-regulating factor 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032700 [exp] 1545 / 0 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.004G006200 [exp] 444 / 2e-138 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G091200 [exp] 435 / 6e-135 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.013G019000 [exp] 366 / 8e-111 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.015G012800 [exp] 286 / 6e-80 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 265 / 9e-74 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G082901 [exp] 261 / 5e-72 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G027000 [exp] 179 / 1e-46 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.005G026950 [exp] 56 / 2e-08 AT1G09060 167 / 4e-48 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020084 [exp] 937 / 0 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10006741 [exp] 837 / 0 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10020033 [exp] 428 / 2e-134 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10015260 [exp] 362 / 1e-109 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 256 / 1e-70 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10027890 [exp] 249 / 2e-68 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10037812 [exp] 226 / 4e-61 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10017092 [exp] 221 / 2e-59 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10025380 [exp] 178 / 5e-46 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002052 [exp] 135 / 2e-36 AT1G62310 199 / 5e-60 transcription factor jumonji (jmjC) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] PF08879 [poplar] [flax] WRC WRC
Representative CDS sequence Show only first row Show all	>Potri.011G041400.1 pacid=42781297 polypeptide=Potri.011G041400.1.p locus=Potri.011G041400 ID=Potri.011G041400.1.v4.1 annot-version=v4.1 ATGGAGGCACTACCGGACCACCTCCGTTGCAAGAGAACAGACGGCCGGCAATGGCGGTGCAACCGGCGGGTGATGGAGGATAAGAAGCTCTGTGAAATTC ACCACCTTCAAGGCCGCCATAGGCAGTATAGAAGGAAAGTTCCAGAGAATTTGAAATTGCAGAGAAAGAAGAGCAAGAAATCAGCAACATCAAGTTCTAA TGCTGAAACCCTAATTAGGGTTTCTTCAAAAGAGGGGAAATTAGGGAAATTTAAGAAGAAAGGAAAGAAATTGAAGAGAGGGGATTTACAGTTGGATTTG ATTAGGATGGTTTTACAGAAAGAAATGGAGAAGAGGAAGAGTAAGAAAAGGAAAAGTTTTTCAGAGAAAGTAAGTGTTGATAATGGTGATGATAATGATA ATGTGAATGACTGCAGTGAGAGTGAAGAAGGAGAAGGAGAAGAGTTAATGAGAAATTTGCCAAATGGGTTCATGGCAATATCACCTGCTAAGAGTTTTGG GAATGGCAATGTGGGTTGTTCTAGTTCACATTGTGATATTAAGATTGGAGGAGATGTTTTTAACGGGGCTAGTACTGCTAGAAGATGTTTTAGGTCTAAA AATGTTGAGCCAATGCCAATTGGGAAATTGCAGGTTTTGCCGTATAAGAGGGATGGAGTGAGATTGAGGAAGGGGAAGAGGAAGAAGTGCCACTGGTGTA GGAGTAGTACGAGGACATTGATTAGGTGTTCGAGTTGTCGGAAAGAGTATTATTGTTTGGATTGCATCAAAGAGCAGTATTTGGAAACACAAGAAGAAGT TAGGAGGGAATGTCCTATGTGTCGTGGAACTTGCAGCTGTAAGGTCTGCTCAGCGATTCAATGTAGGGACATTGCATGTAAGGACTTGTCCAAGGAGAAA AGTGAAGTAGACAACGTTTTACATTTTCATTATTTGATTTGCATGCTTCTTCCCATACTGAAACAAATAAATCAAGATCAGAGCATTGAGCTAGAAATAG AGGCGAAAATAAAAGGCCAGAAGCCTTCTGAAGTTCAAATCCAGCAGGCTGAAGTCAGCTGCAATAAGCAATGTTGCTGCAATAACTGCAAGACTTCCAT AGTGGATTTCCATAGGAGCTGTCCTGAGTGTTCCTATAACCTTTGCTTAAGTTGTTGTCGGGATATTTTTCATGGGGGCGTACATGGAGGTGTTAAAACT CTTTTATGCAAATGTCCAAATGGAAGGAAAGCTTGTATACCTGGCAAACAACTTTCGGAAATGAAATCACTTTGTGCCACAAAGCAGAGTTACGGCAGCA AATATCTTGGTTCGACATTCTCACCTTGTCGGAGTGCTGTGGATCGTAATGGTGGTATACCTTGTCCCTCTAGAAAGTTTGGAGGTTGTGGTGGTAGCCT ACTTGATTTGAGTTGCATTTTCCCCTTATGTTGGACAAAAGATCTGGAAGTAAATGCAGAAGAATTAGTTGGCTGCTATGAGTTACCAGAAACCTTGGAT GTTCGATCATGTTGCTCATTATGTGTTGGGATGGATTGTGAATCTAACGGGATTGAACAGCTGCAAGAAGCAGCTGCAAGAGAAGATTCTGGTGATAACC TTTTATATTATCCAACCATCATTGATGTTCGCAGTGATAACCTAGAACACTTTCAGAAGCACTGGGGCAGAGGTCAGCCTGTGATAGTTCGTAATGTGCT TCAGAGTACATCTGATTTGAGTTGGGATCCAATAGTCATGTTCTGCAATTATCTTAAGAATAATGCTGCCAGATCTCAAAATGGGCAAGCTACAGATTGC TCGGACTGGTTTGAGGTAGAAATTGGTATAAGACAGATGTTTATGGGGTCTTTTAAGGGCCTGACGAATGCCAACATATGGCATGAGAAGCTGAAATTGA AGGGTTTGCTTTCTTCTTATTTATTCCAAGAACATTTTCCAGTTCATTATAGTCACGTCCTTCAGGCTCTACCACTTCCAGAATACATGGACCCCATTTC AGGTGTTCTAAACATTGCTGCAGATTTGGGGCAGGAAACCTCAAAGTCTGATCTGGGTCCTTGTCTTTATATCTCATATGGAAGTGGTGAGAATCTTTCA CAGGCTGATTCTGTGACAAAACTGCGTTATAATTCATATGATGTGGTTAATATTTTGGCACATGCTACTGATGTCCCTGTATCTACAAAACAGCTTAATT ACATAAGAAAGTTAATGACAAAGCACAAGGACCAGAATAAACAGAGCGGAGAAGCACCTTTAGATGAGGAAAACATTGAAGTGGAATTGCATGATATGTT CAGAGAAGATATGCAAGTAAACAAGAAAGTTGCTAGAGTATCCTGGTTCTCTGCTGCAAGACATGAAACTCATGCTTCAAATCTGAAAGATAGAGACGTG TTCCATGATGGGGATTCTGGTTCTGATTCTGATTCTGATTCTGATTCTCACACTGATACTGATACTGAAGTCTCAAAATTTTTCTTTGGACCTGTTAAAA GTTCAAGGTCATCAGATAATCTTAAGTTTCATGGGAATCACTCGGAGACTTCCAATCATTTCATTTCCGAGTCTTGTGGTGCCCAATGGGATGTCTTTCG TAAACAGGATGTTCCCAAGCTTGTAGAATACCTTAGAAGGCACTCTAATGAGTTCACTCACACATACGGCTTCCAAAAGCATATGGTTCATCCAATACTT GATCAGAATTTCTTTCTTGATGCATATCATAAAATGAGACTGAAGGAGGAGTTCAAAATTGAACCCTGGAGTTTTGATCAACATGTTGGAGAAGCAGTGA TTGTTCCTGCTGGATGCCCATACCAAATTAGAAATCTTAAGTCATGCGTCAGCGTGGTTCTGGACTTCCTCTCGCCAGAAAATGTTACTGAATGCATTCA GTTGATGGATGAATTACGACAACTTCCAGAGAACCATAAGGCCAAAGTTGACAGTTTAGAGGTGAAGAAAATGGCATTGCACAGTATCAGTAGAGCAGTC AGAAAAATTCATGAGCTTACAAGGGCAGAGACCAGCATGGACCTCAATGGCTAA
AA sequence Show only first row Show all	>Potri.011G041400.1 pacid=42781297 polypeptide=Potri.011G041400.1.p locus=Potri.011G041400 ID=Potri.011G041400.1.v4.1 annot-version=v4.1 MEALPDHLRCKRTDGRQWRCNRRVMEDKKLCEIHHLQGRHRQYRRKVPENLKLQRKKSKKSATSSSNAETLIRVSSKEGKLGKFKKKGKKLKRGDLQLDL IRMVLQKEMEKRKSKKRKSFSEKVSVDNGDDNDNVNDCSESEEGEGEELMRNLPNGFMAISPAKSFGNGNVGCSSSHCDIKIGGDVFNGASTARRCFRSK NVEPMPIGKLQVLPYKRDGVRLRKGKRKKCHWCRSSTRTLIRCSSCRKEYYCLDCIKEQYLETQEEVRRECPMCRGTCSCKVCSAIQCRDIACKDLSKEK SEVDNVLHFHYLICMLLPILKQINQDQSIELEIEAKIKGQKPSEVQIQQAEVSCNKQCCCNNCKTSIVDFHRSCPECSYNLCLSCCRDIFHGGVHGGVKT LLCKCPNGRKACIPGKQLSEMKSLCATKQSYGSKYLGSTFSPCRSAVDRNGGIPCPSRKFGGCGGSLLDLSCIFPLCWTKDLEVNAEELVGCYELPETLD VRSCCSLCVGMDCESNGIEQLQEAAAREDSGDNLLYYPTIIDVRSDNLEHFQKHWGRGQPVIVRNVLQSTSDLSWDPIVMFCNYLKNNAARSQNGQATDC SDWFEVEIGIRQMFMGSFKGLTNANIWHEKLKLKGLLSSYLFQEHFPVHYSHVLQALPLPEYMDPISGVLNIAADLGQETSKSDLGPCLYISYGSGENLS QADSVTKLRYNSYDVVNILAHATDVPVSTKQLNYIRKLMTKHKDQNKQSGEAPLDEENIEVELHDMFREDMQVNKKVARVSWFSAARHETHASNLKDRDV FHDGDSGSDSDSDSDSHTDTDTEVSKFFFGPVKSSRSSDNLKFHGNHSETSNHFISESCGAQWDVFRKQDVPKLVEYLRRHSNEFTHTYGFQKHMVHPIL DQNFFLDAYHKMRLKEEFKIEPWSFDQHVGEAVIVPAGCPYQIRNLKSCVSVVLDFLSPENVTECIQLMDELRQLPENHKAKVDSLEVKKMALHSISRAV RKIHELTRAETSMDLNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Potri.011G041400 [exp]	0	1
AT4G31880			unknown protein		Potri.006G186700 [exp]	3.46	0.8820
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	5.74	0.8839	SDG904
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	8.71	0.8625
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.017G041100 [exp]	10.39	0.8741
AT5G12400			DNA binding;zinc ion binding;D...		Potri.001G254300 [exp]	12.00	0.8515
					Potri.001G241250 [exp]	13.52	0.7728
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	16.24	0.8553
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.010G087700 [exp]	16.70	0.8455
					Potri.003G148601 [exp]	16.88	0.8573
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.001G253400 [exp]	19.74	0.8334

Compare expression of checked genes

Potri.011G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.