Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21450 359 / 2e-125 PapD-like superfamily protein (.1.2.3) AT5G54110 310 / 1e-106 ATMAMI membrane-associated mannitol-induced (.1) AT4G05060 301 / 2e-102 PapD-like superfamily protein (.1) AT4G00170 58 / 1e-09 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT3G60600 57 / 2e-09 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT2G45140 57 / 3e-09 PVA12 plant VAP homolog 12 (.1) AT5G47180 50 / 3e-07 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G51270 50 / 1e-06 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT1G08820 47 / 7e-06 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT2G23830 45 / 1e-05 PapD-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033500 [exp] 374 / 4e-131 AT4G21450 358 / 3e-125 PapD-like superfamily protein (.1.2.3) Potri.019G116400 [exp] 310 / 2e-106 AT4G21450 270 / 1e-90 PapD-like superfamily protein (.1.2.3) Potri.011G126200 [exp] 308 / 8e-106 AT5G54110 288 / 5e-98 membrane-associated mannitol-induced (.1) Potri.001G408200 [exp] 305 / 3e-104 AT5G54110 322 / 3e-111 membrane-associated mannitol-induced (.1) Potri.013G147800 [exp] 303 / 8e-104 AT4G21450 266 / 5e-89 PapD-like superfamily protein (.1.2.3) Potri.002G144800 [exp] 66 / 2e-12 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.014G060900 [exp] 63 / 2e-11 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.003G082500 [exp] 61 / 6e-11 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.002G144000 [exp] 61 / 1e-10 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002595 [exp] 372 / 2e-130 AT4G21450 389 / 4e-137 PapD-like superfamily protein (.1.2.3) Lus10018420 [exp] 369 / 2e-129 AT4G21450 383 / 6e-135 PapD-like superfamily protein (.1.2.3) Lus10039757 [exp] 303 / 3e-103 AT4G21450 316 / 1e-108 PapD-like superfamily protein (.1.2.3) Lus10018534 [exp] 302 / 3e-103 AT4G21450 316 / 2e-108 PapD-like superfamily protein (.1.2.3) Lus10037873 [exp] 295 / 2e-100 AT5G54110 331 / 6e-115 membrane-associated mannitol-induced (.1) Lus10036495 [exp] 75 / 1e-15 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10010360 [exp] 71 / 5e-14 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 65 / 7e-12 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 65 / 1e-11 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 59 / 6e-10 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF00635 [poplar] [flax] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Potri.011G041900.1 pacid=42781534 polypeptide=Potri.011G041900.1.p locus=Potri.011G041900 ID=Potri.011G041900.1.v4.1 annot-version=v4.1 ATGGTCATAGCGGACCAGAGATCACCCGCCGATATTACGAACAACAATAACAATAACAATAACAAAGTTTGGGGACTTTTTAAACTGCCGTTTTTAGGAG GAAGCGACGCGAACACGACACCCTCTTCTTCTTCTACTACCACTGCTACCACTCCAACTATGATGATGCAGCAGCAGCAGCACCAGCACCACCATCACCA CCATAACCACCAGCACAACTCGCAAATTGAAGGATCTTCTAATCCTCCTCACCCTTCCAATTCTGTCTCTTCTGTTGCTAGATCGCTTTTGCCTACTCGT CGTCGTCTTAAACTCGATCCAGCTTCTAAGCTTTACTTTCCTTATGAACCTGGCAAGCAGGTCCGGAGTGCCATCAGGATTAAAAACACTAGCAAGTCAC ATGTAGCGTTTAAGTTTCAAACAACTGCACCGAAAAGCTGTTTCATGCGTCCTCCTGGGGCTATTCTTGCACCTGGGGAAAGTATCATTGCTACAGTCTT CAAGTTTGTTGAGCTGCCAGAAAATAATGAGAAACCAATGGAACAGAAGAGCAAGGTTAAATTTAAAATCATGAGCCTGAAGGTGAAAGGGGTTATGGAC TATGTACCTGAGCTGTTTGATGAGCAGAAAGATCAGGTAGCAATAGAGCAAATATTGCGGGTTATTTTTCTCGATCCGGAGCGTCCTAGTCCTGCTTTGG AAAAGTTGAAGCGCCAATTGGCTGATGCTGATGCAGCTGTTGAGGCACGCAAGAAGCCTCCAGAAGATGCAGGCCCAAGGATTATCGGTGAAGGACTAGT TATAGATGAATGGAAAGAGCGAAGAGAAAGATACCTTGCTCGGCAGCAGGGTGAAGGAGTAGACTCAGTATAG
AA sequence Show only first row Show all	>Potri.011G041900.1 pacid=42781534 polypeptide=Potri.011G041900.1.p locus=Potri.011G041900 ID=Potri.011G041900.1.v4.1 annot-version=v4.1 MVIADQRSPADITNNNNNNNNKVWGLFKLPFLGGSDANTTPSSSSTTTATTPTMMMQQQQHQHHHHHHNHQHNSQIEGSSNPPHPSNSVSSVARSLLPTR RRLKLDPASKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVELPENNEKPMEQKSKVKFKIMSLKVKGVMD YVPELFDEQKDQVAIEQILRVIFLDPERPSPALEKLKRQLADADAAVEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQGEGVDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21450			PapD-like superfamily protein ...		Potri.011G041900 [exp]	0	1
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.015G049000 [exp]	8.18	0.8646
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.019G020700 [exp]	14.89	0.8207
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036160 [exp]	24.71	0.8072
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180500 [exp]	33.16	0.8286
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.007G018900 [exp]	35.77	0.8159
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Potri.002G035900 [exp]	36.16	0.8125
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	44.27	0.8196
AT2G37975			Yos1-like protein (.1)		Potri.016G109500 [exp]	52.30	0.7984
AT2G38340	AP2_ERF	DREB2E, DREB19	dehydration response element-b...		Potri.016G126100 [exp]	53.70	0.8069	Pt-DREB2.6
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Potri.004G156200 [exp]	58.35	0.8063	Pt-RD2.2

Compare expression of checked genes

Potri.011G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.