Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28780 174 / 1e-47 PIF1 helicase (.1) AT3G51700 151 / 9e-40 PIF1 helicase (.1) AT3G51690 133 / 8e-34 PIF1 helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185950 [exp] 2053 / 0 AT5G28780 213 / 3e-61 PIF1 helicase (.1) Potri.012G032376 [exp] 1942 / 0 ND / Potri.001G165240 [exp] 1310 / 0 AT5G28780 171 / 1e-46 PIF1 helicase (.1) Potri.013G071501 [exp] 1287 / 0 AT5G28780 127 / 1e-31 PIF1 helicase (.1) Potri.009G002650 [exp] 1184 / 0 AT5G28780 154 / 1e-40 PIF1 helicase (.1) Potri.008G203701 [exp] 308 / 3e-93 AT5G28780 70 / 5e-13 PIF1 helicase (.1) Potri.008G167001 [exp] 281 / 2e-86 AT5G28780 220 / 2e-70 PIF1 helicase (.1) Potri.009G007400 [exp] 249 / 1e-74 AT5G28780 208 / 2e-65 PIF1 helicase (.1) Potri.007G048501 [exp] 254 / 3e-74 AT5G28780 123 / 3e-31 PIF1 helicase (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02689 [poplar] [flax] Herpes_Helicase Helicase CL0023 [poplar] [flax] P-loop_NTPase PF05970 [poplar] [flax] PIF1 PIF1-like helicase CL0023 [poplar] [flax] PF14214 [poplar] [flax] Helitron_like_N Helitron helicase-like domain at N-terminus
Representative CDS sequence Show only first row Show all	>Potri.011G042150.1 pacid=42782359 polypeptide=Potri.011G042150.1.p locus=Potri.011G042150 ID=Potri.011G042150.1.v4.1 annot-version=v4.1 ATGCAGAGCGTTTGGCACGTTCATCAAAGAAAAAACCCCTCCTTTACATCATGTTGTGCTAATGGCAAAATCCAATTGCCTACTGCTCCTAACACACCTC AATTTCTAGATGATCTTTTAAATCCTGACAAAGGTTCATTGTCCATCAAATTCCGGCATAACATTCGTGCTTATAATTCAATGTTTGCTTTCACTTCAAT GGGAGCGCAGATTGATCATACTGTCAATTCTCAACCAGGGCCATATATATTTAAAATAAATGGACAATGTCATCATCTTATGGGATCATTAGTACCAATT GATGCTGAATCACCAAGATTTGCACAACTATACATCTTTGACACAGACAATGAAATTGCTAATCGACTACACCCTTTTAATAATGATAATTGTCAATCAT CTTTAGATGAAAATGTTGTCAACAAACTTATTGACATGCTTGATTCTTCCAATGCATTGGTTAAATTGTTTCGTCAAGTTAGACATAGACTTAACAATGA TGAATTCCCGAATTTCAAACTTCGTTTAATTGGTAAAAGAGATGGTGACTCAAAGCAATATGATGATCCTTCCTCTAATGATGTATGTGGTTTAATTGTT GGCGATATTGGAGAATCACAAACTGATAGAGATATTATTATTGAAGGTTATTCTAGAAATCTCCGCAGGATCTCTAAATTGCATCCAAAATTTATGTCTC TTCAGTATCCACTCTTATTTCCTTATGGTGAAGATGGTTATCATACTGACATTTTATTCACAAATCAAGAGCATTATACTCCTTCAAAACGTCAAAAAGT TACAATGCGAGCATATTATGCTTATGTCATTCAAGAAAAATTAGGAGATAGTAGTACACTTACCAAAGGCGGAAGACTTTATCAACAATTTTTAGTTGAT GCATTTATGAATGTTGAACAAGAACGCCTTGATTTCATTCGCTCAAACCAAGAAAATCTGAGAACTGAATCTTATAAAGTACTGGAAAAAATCATCCTCC CCTCTTCTTTAACTGGAAGCCCTAGATACATGATTAACAATTATCATGATGCAATGGCTATATGTCGTCATTATGGTAATCCTGACCTTTTTATTACATT CACTTGCAATGTCAATTGGCCTGAAATTCAAAGAGAAATTAAAAAAAGCCGAAATTATAAAGCTGAAGACAAACCTGACATAATTGCAAGAGTATTTCGA TACAAACTTAATGATATGATTTCATTCATTAAATCAGGACAGCCCTTCGGGAAAACAATTGCTGATGTTTGTGCTATTGAATTCCAAAAAAGAGGCTTGC CGCACACTCATTTATTGATTTGGCTAGCTTCTGAATACAAATTTCGATCACCTCAGGATGTCGATTCAGTTATTTCGGCTGAACTGCCAAACAGAGCAGA TGATCCTCATTGCTATGCAATTGTTTTAAAATTTATGCTGCATGGTCCATGCGGAATTGCTAGCCCAAAAGCCCAATGTATGAAGGGAAATCAATGTTCA AAAAAATTCCCTAAAAAGTTTAAGCAATCAACGGTTTTCGGTGAAAATGGCTTTGTGTTTTACAAGCGACGAAATTTCCCTGCGTCATTTGTTATGAAAA ATGGAATTGCTCTCTCTAATTCCTATGTTGTCCCATACAACAAAGAGCTTCTAATCCGTTATAATGCTCATGTTAATGTTGAAATTTGTTGCCAATCAAT GCTCATAAAATATCTTTTCAAATATGTTAGCAAAGGATCTGATAGGTGTCGAGCTGTTATTCAAGGTCAAACAAACGATGAGATTCAGGCTTATCTTAAT TGTAGATTTGTTTGTCCTTATGAAGCTGTATGGCGACTCTTACAATTTCCAATCCATTCAAGAAACCCAGCAGTTGAAAGACTTCAAATACATTTGCCAA TGCAACATTCTGTTGTTTTCTTTGGAAATCAAAACTTATCTTCTGTTTTAAGAAAAAATGGTCTCAATAAGACAATGCTCACAGGATGGTTTGATCAGAA CAAAGAAGATGTTGAAGCAACACAGTTATATTACTCGCAATTTCCAAACAAATATGTTTGGGATGCTAGGCAGAAAGAATGGATTTACAGAACAAGAGGT TTTTCACTTGGACGTATAACATATGTGCATCCTGCTGCTGGCGAATTCTTTGAATATCTACGTTGTGTCTCTGGTATTGTTTATCCAACCTTTCAACTCG CCTGCAAAGCACTTGGTCTCCTTGATGATGGCAAAGAATGGGCTGAAGCTTTTTCAGAAGCTGTTTTAACTGCTTCCTCCTCACAACTTAGGCAACTATT TGTCAGTGTCACTCTATTTTGTCAAATTGCTAGCCCCCAAGATTTGCTTGATCAATTTTGGCACACAATGCATGACGACATTAGAATCAAGCTATCATCT TTCTCCCCACATAATCTTCATTTCAGTGATAATGAACTTAAAAATTATGTTCTTTATGAACTTGAACAACTTTTCAATGCCTTGGCAACATCCCTCAAAG ACTATAATTTACCACTGCCAAATGATCGTTTGATGTCTGAAATTAGAAATAATCTCCTTAGAGAAGAACTCAATTATGATATTTCTGAACTTCGAAGCAA TAATGAAGCATCAATTTCATTACTTAACACATGCCAAAAGAAAATTTATGATCGAGTTATGGAATCAATTTCAAAAAATCAACAATCTCTTATTTTTGTT TACGGGCATGGCGGCACAGGGAAAACTTTTTATGGCATTCACTTATTAATAGTATTAGATCAGAAGGGAATCGCATCTATTCTGCTCCCTGGTGGTCGCA CAGCTCACTCAAGGTTTAAGATTCCTCTTGCTATAAATGAGAACTCAACATGTGAAATAAAAAAAAATACTCATCTTTCAAGGTTGATTGAAACGACAAC ACTTATTGTATGGGATGAAGCTCCTATGAATAATCGCTACTGTTTTGAAACATTGGATAGATCATTACGTGATATAATGGGCCAAACTGGTCATTCCAAT CATAACCAACCTTTCGGTGGGAAATCTATTTTACTTGGTGGGGATTATCGTCAAATTCTCCCTAAAGAGCTATTATCACACCCAAAAAACATTACTGTTA CTGAAATCAATAATTTCATACTTGGAGTTACACATGGTCCTCAACGCATTTATCTTAGCAATGATTCTGTTGATGCATCTTCCAGTGATAACGACAATAT AAACTTATTATATCCATTGGAATTTATAAACCAACTTGAGTTCAGTGGTGTTCCTTCGCACATTCTTGCTTTGAAAATAGGAGCGCCAATTATGTTGCTG AGGAATCTGAGTCCAATGATAGGCTTATGTAATGGAACACGACTAATCATCACACAACTTGCTGATAGAGTTATTGAAGCTCAAATTATAACAGGCTCAC ACATTGGTGACCGAGTTTTTATACCAAGGATCATCTTCCCAATTAATGATGACAAATGCCCATTTACAATCAAACGAAGACAATTTCCAATACGATTATG CTATGCTATGACAATCAATAAAAGTCAAGGACAATCATTAAAATTTGTTGGTGTTTTCTTAAAGGAGCAAGTTTTTGCACATGGCCAACTATATGTCGCT CTTTCAAGAGTTACATCTAAAAAAGGTTTTAAAAATCATTTCATGTGA
AA sequence Show only first row Show all	>Potri.011G042150.1 pacid=42782359 polypeptide=Potri.011G042150.1.p locus=Potri.011G042150 ID=Potri.011G042150.1.v4.1 annot-version=v4.1 MQSVWHVHQRKNPSFTSCCANGKIQLPTAPNTPQFLDDLLNPDKGSLSIKFRHNIRAYNSMFAFTSMGAQIDHTVNSQPGPYIFKINGQCHHLMGSLVPI DAESPRFAQLYIFDTDNEIANRLHPFNNDNCQSSLDENVVNKLIDMLDSSNALVKLFRQVRHRLNNDEFPNFKLRLIGKRDGDSKQYDDPSSNDVCGLIV GDIGESQTDRDIIIEGYSRNLRRISKLHPKFMSLQYPLLFPYGEDGYHTDILFTNQEHYTPSKRQKVTMRAYYAYVIQEKLGDSSTLTKGGRLYQQFLVD AFMNVEQERLDFIRSNQENLRTESYKVLEKIILPSSLTGSPRYMINNYHDAMAICRHYGNPDLFITFTCNVNWPEIQREIKKSRNYKAEDKPDIIARVFR YKLNDMISFIKSGQPFGKTIADVCAIEFQKRGLPHTHLLIWLASEYKFRSPQDVDSVISAELPNRADDPHCYAIVLKFMLHGPCGIASPKAQCMKGNQCS KKFPKKFKQSTVFGENGFVFYKRRNFPASFVMKNGIALSNSYVVPYNKELLIRYNAHVNVEICCQSMLIKYLFKYVSKGSDRCRAVIQGQTNDEIQAYLN CRFVCPYEAVWRLLQFPIHSRNPAVERLQIHLPMQHSVVFFGNQNLSSVLRKNGLNKTMLTGWFDQNKEDVEATQLYYSQFPNKYVWDARQKEWIYRTRG FSLGRITYVHPAAGEFFEYLRCVSGIVYPTFQLACKALGLLDDGKEWAEAFSEAVLTASSSQLRQLFVSVTLFCQIASPQDLLDQFWHTMHDDIRIKLSS FSPHNLHFSDNELKNYVLYELEQLFNALATSLKDYNLPLPNDRLMSEIRNNLLREELNYDISELRSNNEASISLLNTCQKKIYDRVMESISKNQQSLIFV YGHGGTGKTFYGIHLLIVLDQKGIASILLPGGRTAHSRFKIPLAINENSTCEIKKNTHLSRLIETTTLIVWDEAPMNNRYCFETLDRSLRDIMGQTGHSN HNQPFGGKSILLGGDYRQILPKELLSHPKNITVTEINNFILGVTHGPQRIYLSNDSVDASSSDNDNINLLYPLEFINQLEFSGVPSHILALKIGAPIMLL RNLSPMIGLCNGTRLIITQLADRVIEAQIITGSHIGDRVFIPRIIFPINDDKCPFTIKRRQFPIRLCYAMTINKSQGQSLKFVGVFLKEQVFAHGQLYVA LSRVTSKKGFKNHFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28780			PIF1 helicase (.1)		Potri.011G042150 [exp]	0	1
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	1.41	1.0000
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.019G091200 [exp]	2.00	1.0000	FUCT3.1
					Potri.019G002628 [exp]	3.46	0.8964
AT5G36930			Disease resistance protein (TI...		Potri.019G000657 [exp]	5.29	0.8172
					Potri.010G007833 [exp]	6.92	0.9352
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.005G187700 [exp]	7.54	0.7715
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.004G036000 [exp]	7.93	0.9243
AT2G35615			Eukaryotic aspartyl protease f...		Potri.003G105300 [exp]	8.06	0.8826
AT3G22640		PAP85	cupin family protein (.1)		Potri.005G212333 [exp]	8.66	0.7237
AT1G17860			Kunitz family trypsin and prot...		Potri.010G007811 [exp]	14.28	0.7957

Compare expression of checked genes

Potri.011G042150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.