Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61350 623 / 0 ARM repeat superfamily protein (.1) AT5G50900 223 / 2e-65 ARM repeat superfamily protein (.1) AT2G45720 214 / 2e-62 ARM repeat superfamily protein (.1.2) AT1G01830 196 / 2e-55 ARM repeat superfamily protein (.1.2.3) AT2G05810 187 / 4e-52 ARM repeat superfamily protein (.1.2) AT2G23140 79 / 3e-15 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT4G16490 72 / 3e-13 ARM repeat superfamily protein (.1) AT3G01400 66 / 2e-11 ARM repeat superfamily protein (.1) AT3G54790 61 / 1e-09 ARM repeat superfamily protein (.1.2) AT4G02150 55 / 1e-07 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033800 [exp] 934 / 0 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.014G076500 [exp] 240 / 8e-72 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G153700 [exp] 229 / 6e-68 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.014G158700 [exp] 214 / 3e-62 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.015G103700 [exp] 210 / 7e-61 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.012G104400 [exp] 206 / 4e-59 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.002G224400 [exp] 199 / 2e-56 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 86 / 3e-17 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 83 / 3e-16 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002598 [exp] 534 / 0 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1) Lus10018423 [exp] 526 / 0 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1) Lus10041369 [exp] 219 / 8e-64 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10036559 [exp] 209 / 2e-60 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10029995 [exp] 160 / 1e-42 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10035337 [exp] 153 / 2e-41 AT2G05810 382 / 3e-129 ARM repeat superfamily protein (.1.2) Lus10016848 [exp] 111 / 1e-26 AT2G45720 326 / 8e-108 ARM repeat superfamily protein (.1.2) Lus10034933 [exp] 103 / 8e-26 ND 87 / 6e-21 Lus10024899 [exp] 76 / 4e-14 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 76 / 4e-14 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.011G042300.1 pacid=42780912 polypeptide=Potri.011G042300.1.p locus=Potri.011G042300 ID=Potri.011G042300.1.v4.1 annot-version=v4.1 ATGTGCAGTCTCAGGCAAGCTATTGAGGTTATTTCTTCTTTGATCTCCTACTCTCATCCAATTAAAGTTTTTGTCGTGAAATGGCAACTGATTAGAAACA AGCTAGAAGAGCTATGCTCAAGCCTAACTGCCCTAGAGAATTGTGATTCAATCCAGAATCCGATACTTTCAGGCATGATATCTGCTATCCTAGCCTCTGC TAGTGACTGCTATGATCTTGCTAGAAGATGTGTGGATCTTTCGTACAGTGGCAAGCTCTTGATGCAGAGTGATTTGGATGTAATGGTTGCAAAGTTTGAG AGACATGTAAAGAATCTATTTGGGATTTGTACTGCAGGCATTTTGACTCAGGGTTTTGCCATTGTTGTGTCGAGGCCTGGTGTCAATGCTCGCAAAGATG ATATGAGGTTTTACTTTAGAGATCTGTTGACAAGAATGAAAATTGGTGACTTGGAAATGAAGAGACAGGCTTTGCTCAATTTGTATGATGTTGTTGTTGA AGATGATAAGTATGTGAAGATACTTGTCGAAGTTGGTGACATAGTGAATATACTGGTTAGTCTTCTTGATTCAGTGGAATTGGAAATTCAACAAGAGGCT GCAAAGGTCGTGTCAGTGATTTCGGGCTTTGATTCCTACAAATCTGTTTTGATTGGAGCTGGGATTATAGGGCCTTTGATCAGGGTTTTGGAGAGTGGCA GTGAAATAAGCAAGGAGGGTGCTGCAAGAAGCTTGCAAAAATTAACTGAGAATTCTGATAATGCTTGGTCAGTTTCAGCTTATGGGGGTGTGACAGCTCT ATTGAAAATATGTACTAGTGCTGATTCTAGAACAGCACTTGTTTGCCCTGCTTGTGGGGTATTGAGAAATCTTGTTGGTGTTGATGAGATAAAGAGATTT ATGATTGAAGAAGGTGCAGTGCCCACATTAATCAAGCTGGCAAGATCAAAAGATGAAGCTGTGCAGATAAGTTCGATCGAGTTCCTTCAAAATATTGCAT CTGTAGACGAATCAGTGAGGCAATTGGTGGTCAGAGAAGGTGGAATTCGGGCATTAGTACGCGTTTTTGATCCGAAAAGCGCATGTACTTCAAAATCTCG AGAGATGGCATTATGGGCAATTGAGAATCTATGTTTCTCTTCAGCTGGTTATATCATTATGTTGATGAATTATGGTTTTATGGATCAGCTTCTTTTCTTT CTTCGAAATGGAGATGTTTCGGTTCAAGAATTGGCACTGAAAGCAGCATTTAGGCTCTGTGGAAAATCAGAGGAAACTAAAAAGGCAATGGGGGATGCTG GATTTATGTCAGAGCTTGTTAAGTTTCTTGATGCAAAATCATTTGAAGTTAGAGAAATGGCAGCTGTGGCACTCTCCAGCTTAGTTTCTGTGCCTAAAAA CCGTAAAAGATTCGTGCAGGACGATCGCAATGTGGGCTTTCTTCTTCAATTGCTTGACCAAGAAGAGGCAAATTCAGGTAGCAAAAAGTTACTGATCTCT ATATTATTGTCCTTAACAAGTTGCAATAGTGGAAGAAAAAAGATTGCCAGTTCTGGTTATTTGAAGAACATAGAAAAACTTGCAGAAGCTGAAGTTTCTG ATGCTAAAAGACTTGTCAGGAAGCTCTCCACAAATAGATTCCGTAGCATATTAAATGTAATCTGGCATTCTTGA
AA sequence Show only first row Show all	>Potri.011G042300.1 pacid=42780912 polypeptide=Potri.011G042300.1.p locus=Potri.011G042300 ID=Potri.011G042300.1.v4.1 annot-version=v4.1 MCSLRQAIEVISSLISYSHPIKVFVVKWQLIRNKLEELCSSLTALENCDSIQNPILSGMISAILASASDCYDLARRCVDLSYSGKLLMQSDLDVMVAKFE RHVKNLFGICTAGILTQGFAIVVSRPGVNARKDDMRFYFRDLLTRMKIGDLEMKRQALLNLYDVVVEDDKYVKILVEVGDIVNILVSLLDSVELEIQQEA AKVVSVISGFDSYKSVLIGAGIIGPLIRVLESGSEISKEGAARSLQKLTENSDNAWSVSAYGGVTALLKICTSADSRTALVCPACGVLRNLVGVDEIKRF MIEEGAVPTLIKLARSKDEAVQISSIEFLQNIASVDESVRQLVVREGGIRALVRVFDPKSACTSKSREMALWAIENLCFSSAGYIIMLMNYGFMDQLLFF LRNGDVSVQELALKAAFRLCGKSEETKKAMGDAGFMSELVKFLDAKSFEVREMAAVALSSLVSVPKNRKRFVQDDRNVGFLLQLLDQEEANSGSKKLLIS ILLSLTSCNSGRKKIASSGYLKNIEKLAEAEVSDAKRLVRKLSTNRFRSILNVIWHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61350			ARM repeat superfamily protein...		Potri.011G042300 [exp]	0	1
					Potri.017G128400 [exp]	14.49	0.9114
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128200 [exp]	19.44	0.9094
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Potri.006G177500 [exp]	21.44	0.9026
AT1G30700			FAD-binding Berberine family p...		Potri.001G462400 [exp]	28.30	0.9037
AT1G30700			FAD-binding Berberine family p...		Potri.001G462532 [exp]	37.94	0.9010
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.012G035200 [exp]	40.98	0.8543
					Potri.001G001000 [exp]	40.98	0.8953
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G172300 [exp]	46.58	0.8948
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.007G139501 [exp]	74.93	0.8822
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G172200 [exp]	78.99	0.8550

Compare expression of checked genes

Potri.011G042300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.