Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FBL6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62980 648 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT1G12820 647 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G26810 621 / 0 AFB2 auxin signaling F-box 2 (.1) AT4G03190 604 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT4G24390 566 / 0 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT5G49980 558 / 0 AFB5 auxin F-box protein 5 (.1) AT2G39940 307 / 8e-97 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 98 / 2e-21 F-box/RNI-like superfamily protein (.1) AT3G07550 60 / 2e-09 RNI-like superfamily protein (.1.2) AT5G25350 59 / 9e-09 EBF2 EIN3-binding F box protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033900 [exp] 1147 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.001G323100 [exp] 646 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 639 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.014G134800 [exp] 631 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 627 / 0 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 603 / 0 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 595 / 0 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.008G064400 [exp] 301 / 1e-94 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 300 / 5e-94 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020086 [exp] 973 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 964 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10018426 [exp] 951 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 843 / 0 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 840 / 0 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 665 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10011260 [exp] 578 / 0 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035161 [exp] 556 / 0 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 471 / 2e-162 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10011261 [exp] 348 / 6e-118 AT1G12820 241 / 4e-77 auxin signaling F-box 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.011G042400.1 pacid=42781445 polypeptide=Potri.011G042400.1.p locus=Potri.011G042400 ID=Potri.011G042400.1.v4.1 annot-version=v4.1 ATGGATTCGAATCCAAAGATGAGAAAGGAATTTCTTGACTCAACAAGATCATCTCTATTTCCAGATGAAGTACTGGAACGAGTTCTTTCACTCTTGAAAT CACACAAAGATCGTAGCGCAGTCTCTTTAGTATGCAAGGATTGGTACAACGCAGAAAGCTGGTCAAGAACTCATGTTTTTATAGGAAACTGTTATTCAGT CTCTCCTGAAATTGTCGCACGTAGATTCCCAAGAATTAAGAGTGTGACTCTCAAAGGGAAGCCGAGATTTTCTGATTTTAATCTGGTCCCTGAAAACTGG GGAGCTGATGTTCATCCTTGGTTTGTAGTTTTTGCTGCAAAGTATCCCTTTTTGGAAGAGTTAAGGCTTAAGAGAATGGCTGTTAGCGATGAAAGTTTGG AGTTTTTGGCTCTTAATTTTCCTAATTTCAAGGTTCTTTCTCTTTTGAGCTGTGATGGGTTTAGTACTGATGGGCTTGCTGCTATTGCCACTCATTGCAA GAATTTGACTCAGCTTGATATACAAGAGAATGGCATTGATGACAAGAGTGGCAACTGGTTAAGCTGCTTCCCTGAAAACTTCACATCATTGGAAGTACTA AACTTTGCCAACTTGAACACTGATGTCAATTTTGATGCACTTGAGAGGCTTGTAAGTCGGTGCAAATCACTGAAGGTTCTGAAGGCCAACAAAAGTATTT CCTTGGAACAACTACAAAGGCTGCTGGTTTGTGCTCCACAGTTAACAGAGCTTGGTACTGGTTCATTCATGCCAGAGCTTACAGCTCGCCAGTACGCTGA GCTTGGAAGTTCATTTAACCAGCTGAAGAATTTAAATACCCTTTCTGGTTTATGGGAGGCAACAGCACCATACTTACCAGTTCTCTATCCTGCCTGTACA AACTTGACTTTCTTAAACTTGAGCTATGCCTTTCTGCAAAGTATTGAACTTGCGAGTCTTCTTTGTCAATGTCCACGTCTTCGACGCCTCTGGGTCTTGG ACACTGTGGGGGACAAAGGTTTAGAGGCTGTTGGATCTAACTGTCCATTGCTTGAGGAGCTCCGTGTCTTCCCTGCAGATCCCTTTGATGAGGAAGTTAT CCATGGGGTGACTGAAGCTGGGTTTCTTGCTGTGTCTTACGGATGTCGGAGACTCCACTATGTTCTCTACTTTTGCAGGCAGATGACTAATGCTGCAGTA GCCACCATTGTGCAGAACTGCCCAGATTTCACCCACTTCCGTCTCTGCATAATGAATCCAGGCCAACCAGATTACTTGACAAACGAACCCATGGATGAAG CTTTTGGGGCGGTAGTGAGGACATGCACTAAACTACAGAGGCTTTCTGTTTCAGGTCTCTTGACTGACCTGACATTCGAGTATATTGGGCAGTATGCCAA AAATCTGGAAACTCTGTCAGTGGCTTTTGCTGGCAGTAGTGATAGGGGGATGCAGTGCATGCTGGAAGGTTGTCCAAAGTTGAGGAAACTTGAGATAAGG GACTGCCCATTTGGAAATGCAGCACTTCTTTCAGGTTTGGAGAAATACGAGTCAATGAGGTCACTTTGGATGTCAGCCTGCAATGTGACAATGAATGGCT GTCGGGTATTGGCAAGGGAGATGCCCAGATTGAATGTAGAGGTAATGAAAGAGGATGGGAGTGATGATTCTCAGGCTGATAAAGTTTATGTTTATCGTTC TGTTGTGGGACCAAGAAGAGATGCCCCGCCTTGTGTACTGACTCTCTCAGGTTTATAA
AA sequence Show only first row Show all	>Potri.011G042400.1 pacid=42781445 polypeptide=Potri.011G042400.1.p locus=Potri.011G042400 ID=Potri.011G042400.1.v4.1 annot-version=v4.1 MDSNPKMRKEFLDSTRSSLFPDEVLERVLSLLKSHKDRSAVSLVCKDWYNAESWSRTHVFIGNCYSVSPEIVARRFPRIKSVTLKGKPRFSDFNLVPENW GADVHPWFVVFAAKYPFLEELRLKRMAVSDESLEFLALNFPNFKVLSLLSCDGFSTDGLAAIATHCKNLTQLDIQENGIDDKSGNWLSCFPENFTSLEVL NFANLNTDVNFDALERLVSRCKSLKVLKANKSISLEQLQRLLVCAPQLTELGTGSFMPELTARQYAELGSSFNQLKNLNTLSGLWEATAPYLPVLYPACT NLTFLNLSYAFLQSIELASLLCQCPRLRRLWVLDTVGDKGLEAVGSNCPLLEELRVFPADPFDEEVIHGVTEAGFLAVSYGCRRLHYVLYFCRQMTNAAV ATIVQNCPDFTHFRLCIMNPGQPDYLTNEPMDEAFGAVVRTCTKLQRLSVSGLLTDLTFEYIGQYAKNLETLSVAFAGSSDRGMQCMLEGCPKLRKLEIR DCPFGNAALLSGLEKYESMRSLWMSACNVTMNGCRVLAREMPRLNVEVMKEDGSDDSQADKVYVYRSVVGPRRDAPPCVLTLSGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.011G042400 [exp]	0	1	FBL6
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.014G039100 [exp]	5.47	0.8415
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	7.34	0.8515	ATKEA4.2
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	8.36	0.8590
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.008G059500 [exp]	12.64	0.8082
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	12.80	0.8295
AT1G18340			basal transcription factor com...		Potri.005G176600 [exp]	13.26	0.8039
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.003G214200 [exp]	14.96	0.8187	CALS1.4
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	15.16	0.8292
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.001G416100 [exp]	16.12	0.8021
AT2G41830			Uncharacterized protein (.1)		Potri.016G055100 [exp]	22.00	0.7999

Compare expression of checked genes

Potri.011G042400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.