Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21490 870 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT4G05020 869 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT2G20800 800 / 0 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G28220 749 / 0 NDB1 NAD(P)H dehydrogenase B1 (.1) AT1G07180 209 / 2e-60 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT2G29990 203 / 2e-58 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT5G22140 56 / 4e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G03630 53 / 4e-07 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G44190 52 / 7e-07 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT3G27820 50 / 2e-06 ATMDAR4 monodehydroascorbate reductase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034100 [exp] 1056 / 0 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.013G147400 [exp] 803 / 0 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 785 / 0 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.013G147300 [exp] 780 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.004G036300 [exp] 236 / 2e-70 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 236 / 2e-70 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 200 / 2e-57 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.001G217800 [exp] 57 / 2e-08 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020087 [exp] 928 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10006737 [exp] 926 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10011259 [exp] 910 / 0 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018427 [exp] 810 / 0 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018541 [exp] 745 / 0 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018540 [exp] 704 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10039768 [exp] 703 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10039769 [exp] 697 / 0 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10002599 [exp] 650 / 0 AT4G05020 630 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002601 [exp] 611 / 0 AT4G05020 609 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00036 [poplar] [flax] EF-hand_1 EF hand CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.011G042500.1 pacid=42780452 polypeptide=Potri.011G042500.1.p locus=Potri.011G042500 ID=Potri.011G042500.1.v4.1 annot-version=v4.1 ATGAACAGTTTGAGTTTGTTTAAGAGAGCTTCTAGATGTTTCGATGACTATCCTTCTCTCGCTAAACTCGTTGTCATTTGCACCATCAGTGGTGGATGCT ATGTAGCTTACGCAGATGCAAATGGAACAGGTAGTGCACCGCCAGTTTTGGAGGAGATCAAGAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCAGG AACCAGTTTCTTGAAGAAACTTAACAATCCCTCATATGATGTTCAGGTGATATCGCCTCGCAACTACTTTGCATTCACTCCTTTGTTACCAAGTGTTACA TGTGGTACGGTGGAGGCTCGCAGCATTGTCGAACCAATTCGTAGCATTGTCAGGAAGAAAAGTATTGACATTAGGTACTGGGAAGCTGAATGTTTCAAGA TTGAAGCAGAAAATAAGAAAGTTCATTGTCGACCTAATTCAGAATCCAGTAAGAATGGAAAAGAAGAATTTGTTGTGGATTATGACTATCTTATTATAGC CATGGGAGCTCGTCCGAACACATTCAACACACCTGGTGTAGTTGAGAACTGCAATTTCCTAAAGGAAGTTGAAGATGCTCAGCAGATCCGTCAATCTGTT ATCAACTCATTTGAGAAGGCAAGCTTGCCGACTTTTAGTGATGAAGAAAGGAAGAGAATACTTCATTTTGTAGTTGTTGGTGGTGGACCAACAGGAGTGG AGTTTGCTGCAGAGCTTCATGATTTTGTCAATGAGGATTTAGTCAAACTGTATCCAGCAGCCAAAGATTTTGTAAAAATAACACTACTTGAAGCATCAGA TCATATTTTGAACATGTTTGACAAAAGAATCACAGGTTTTGCGGAAGAGAAGTTCCAAAGAGATGGCATTGATGTGAAGTTAGGGTCGATGGTTGTGAAA GTATCTGATAAAGAAATCTCTACTAAAGTAAGAGGGAATGATGGTGAAATTACTACTATACCATATGGAATGGTCGTCTGGTCAACTGGAAATGGAACTC ATCCTGTCATAAAGGATTTTATGCAGCAAATTGGTCAGAGTAATAGGCGTGCTTTAGCAACTGACGAATGGTTGCGAGTTGAGGGATGTAGTACTATATA TGCACTTGGTGATTGTGCAACAGTTAACCAGCGCAAAGTCATGGAAGATATTGCAGCAATATTTAAGAAGGCAGACAAGGACAATTCTGGAACTCTCACA GTAAAAGAATTTCGAGAAGTCATTAAAGACATTTGTGAAAGATATCCTCAGGTGGAGCTATATTTGAAGAACAAGAAGATGCGTGACCTTGTTGATCTCT TGAAGATGGCTAAAGGGGATGTTGCAAAAGAAGCAATTGAACTGAATATTGAAGAATTTAAGAAAGCCCTTTCAGAAGTTGATTCCCAGATGAAGAATCT TCCAGCAACAGCTCAGGTTGCGGCTCAGCAAGGCACTTATCTTGCTAATTGCTTCAACCGTATGGAAGAGGCTGAAAAAAACCCTGAAGGTCCTATCAGG TTCAGGGAAGAAGGGCGCCATCGCTTCCATCCCTTTAGATACAAGCATTTAGGGCAATTTGCTCCATTGGGAGGAGAACAAACAGCAGCACAGCTTCCTG GTGATTGGGTTTCAATCGGTCAAAGCTCTCAATGGCTTTGGTATTCTGTTTATGCAAGCAAGCTAGTCAGTTGGCGCACCAGGGTGTTGGTGATTTCAGA TTGGACAAGGCGTTTCGTCTTTGGAAGGGATTCCAGTGGCATTTGA
AA sequence Show only first row Show all	>Potri.011G042500.1 pacid=42780452 polypeptide=Potri.011G042500.1.p locus=Potri.011G042500 ID=Potri.011G042500.1.v4.1 annot-version=v4.1 MNSLSLFKRASRCFDDYPSLAKLVVICTISGGCYVAYADANGTGSAPPVLEEIKKKKVVVLGTGWAGTSFLKKLNNPSYDVQVISPRNYFAFTPLLPSVT CGTVEARSIVEPIRSIVRKKSIDIRYWEAECFKIEAENKKVHCRPNSESSKNGKEEFVVDYDYLIIAMGARPNTFNTPGVVENCNFLKEVEDAQQIRQSV INSFEKASLPTFSDEERKRILHFVVVGGGPTGVEFAAELHDFVNEDLVKLYPAAKDFVKITLLEASDHILNMFDKRITGFAEEKFQRDGIDVKLGSMVVK VSDKEISTKVRGNDGEITTIPYGMVVWSTGNGTHPVIKDFMQQIGQSNRRALATDEWLRVEGCSTIYALGDCATVNQRKVMEDIAAIFKKADKDNSGTLT VKEFREVIKDICERYPQVELYLKNKKMRDLVDLLKMAKGDVAKEAIELNIEEFKKALSEVDSQMKNLPATAQVAAQQGTYLANCFNRMEEAEKNPEGPIR FREEGRHRFHPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGQSSQWLWYSVYASKLVSWRTRVLVISDWTRRFVFGRDSSGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21490		NDB3	NAD(P)H dehydrogenase B3 (.1)		Potri.011G042500 [exp]	0	1
AT5G65290			LMBR1-like membrane protein (....		Potri.005G072100 [exp]	1.00	0.7976
AT4G00755			F-box family protein (.1.2)		Potri.002G153900 [exp]	8.48	0.7621
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	10.77	0.7838
AT4G04940			transducin family protein / WD...		Potri.018G148066 [exp]	18.97	0.7286
					Potri.010G080501 [exp]	20.61	0.7009
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.002G193700 [exp]	24.73	0.7094
AT4G35920		MCA1	mid1-complementing activity 1,...		Potri.010G184700 [exp]	24.91	0.7064
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G037900 [exp]	27.92	0.7189
AT1G17780			unknown protein		Potri.001G376800 [exp]	29.34	0.7454
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.015G100900 [exp]	30.04	0.7070

Compare expression of checked genes

Potri.011G042500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.