Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21510 115 / 4e-32 F-box family protein (.1) AT1G61340 114 / 6e-32 F-box family protein (.1.2) AT4G05010 89 / 2e-22 F-box family protein (.1) AT4G35930 77 / 7e-17 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034400 [exp] 284 / 7e-99 AT1G61340 127 / 2e-37 F-box family protein (.1.2) Potri.005G110200 [exp] 67 / 2e-13 AT4G35930 332 / 4e-114 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018432 [exp] 122 / 2e-35 AT4G21510 102 / 3e-27 F-box family protein (.1) Lus10011255 [exp] 119 / 6e-34 AT4G21510 114 / 1e-31 F-box family protein (.1) Lus10025956 [exp] 71 / 1e-14 AT4G35930 301 / 2e-102 F-box family protein (.1) Lus10022370 [exp] 64 / 2e-13 AT4G21510 67 / 1e-14 F-box family protein (.1) Lus10028422 [exp] 65 / 1e-12 AT4G35930 267 / 3e-89 F-box family protein (.1) Lus10041876 [exp] 64 / 5e-12 AT4G35930 265 / 3e-88 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G042800.1 pacid=42781147 polypeptide=Potri.011G042800.1.p locus=Potri.011G042800 ID=Potri.011G042800.1.v4.1 annot-version=v4.1 ATGGCATTGGGGAAGAATTGTATTTCAATGAAGGCAAAGAGTGTTAGTGGTGATGCTTTAGTGAGTGGAGAAGAAGAGGGGTTAGGCTTGAAGTTTGTTA GGTCATATTCGTTTGGAAGGAAAAGGGTTTTGAGCAGTAATAATATTCTTAACGATGAAGATCTGTTGAATCTTGACTCCACTTTTATTTCCTCGTTGAA GAGGCTTCGCAGTTTAAAGCCTGAGAAGTCTAATCTTGAAAGCCTGCCTCAAGATATTTTGATCAGGGTTTTGTGTGGTGTGGATCATGATGATTTGAAG CAGCTTTTTCATGTCTCTAAAGTGATTAGAGAAGCTACTTTGATTGCAAAAGAATGGCATTTTGCCTATAGCACACCAAGAAAAACTCAAGCTTTCCGAA CTCGAATTGATTTTGGGAATCCAAGTGGATTAGATGAAATTGAAGCTCCAAATGCGCCAAAGCAGCGAAGGTCTTACAAGTCGCTGTTAAATCGGAAGAG TATTGCTGATGTATCGGTGGCATTGTTTGCTTCACCGAAGAAGGGGCTATTCATGGAAACAGAGATATGA
AA sequence Show only first row Show all	>Potri.011G042800.1 pacid=42781147 polypeptide=Potri.011G042800.1.p locus=Potri.011G042800 ID=Potri.011G042800.1.v4.1 annot-version=v4.1 MALGKNCISMKAKSVSGDALVSGEEEGLGLKFVRSYSFGRKRVLSSNNILNDEDLLNLDSTFISSLKRLRSLKPEKSNLESLPQDILIRVLCGVDHDDLK QLFHVSKVIREATLIAKEWHFAYSTPRKTQAFRTRIDFGNPSGLDEIEAPNAPKQRRSYKSLLNRKSIADVSVALFASPKKGLFMETEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21510			F-box family protein (.1)		Potri.011G042800 [exp]	0	1
AT3G57880			Calcium-dependent lipid-bindin...		Potri.004G043000 [exp]	3.46	0.7841
AT3G02970		EXL6	EXORDIUM like 6 (.1)		Potri.013G080100 [exp]	7.48	0.7600
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	9.59	0.7716
AT4G38870			F-box and associated interacti...		Potri.008G144000 [exp]	11.40	0.7416
					Potri.001G400401 [exp]	13.63	0.7587
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.010G053700 [exp]	16.30	0.7543
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Potri.012G004150 [exp]	19.97	0.7162
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.006G152600 [exp]	23.15	0.7500
AT1G27330			Ribosome associated membrane p...		Potri.001G057300 [exp]	23.36	0.6996
AT3G29310			calmodulin-binding protein-rel...		Potri.004G124301 [exp]	26.49	0.7676

Compare expression of checked genes

Potri.011G042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.