Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G61320 201 / 1e-58 FBD / Leucine Rich Repeat domains containing protein (.1) AT5G41840 75 / 3e-14 F-box/RNI-like superfamily protein (.1) AT1G69630 74 / 8e-14 F-box/RNI-like superfamily protein (.1) AT3G18150 71 / 5e-13 RNI-like superfamily protein (.1) AT3G29830 70 / 1e-12 F-box/RNI-like superfamily protein (.1) AT5G22670 69 / 2e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78760 68 / 4e-12 F-box/RNI-like superfamily protein (.1) AT3G03360 67 / 7e-12 F-box/RNI-like superfamily protein (.1) AT2G39490 66 / 2e-11 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034500 [exp] 683 / 0 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.017G107600 [exp] 87 / 3e-18 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.008G050800 [exp] 81 / 5e-16 AT2G39490 264 / 1e-84 F-box family protein (.1) Potri.013G151700 [exp] 79 / 1e-15 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 77 / 1e-14 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.010G134200 [exp] 76 / 1e-14 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.017G092301 [exp] 74 / 8e-14 AT1G13570 66 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.016G106600 [exp] 72 / 2e-13 AT5G56420 80 / 4e-16 F-box/RNI-like/FBD-like domains-containing protein (.1.2) Potri.001G395000 [exp] 71 / 5e-13 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034733 [exp] 213 / 2e-62 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10011971 [exp] 211 / 5e-61 AT1G61320 103 / 2e-23 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10010664 [exp] 206 / 6e-60 AT1G61320 125 / 6e-31 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10018433 [exp] 173 / 1e-47 AT1G61330 109 / 2e-25 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10011254 [exp] 92 / 1e-19 AT1G61330 84 / 6e-17 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10006726 [exp] 88 / 1e-19 AT1G61330 66 / 1e-12 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10034414 [exp] 74 / 9e-14 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 70 / 5e-13 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 71 / 9e-13 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10030920 [exp] 69 / 4e-12 AT1G13570 179 / 1e-51 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.011G042900.1 pacid=42780449 polypeptide=Potri.011G042900.1.p locus=Potri.011G042900 ID=Potri.011G042900.1.v4.1 annot-version=v4.1 ATGGCTTCACCAGAAAGAGAGAGCCAAACATTCTTACAGATTTCACGTAAGAGACTAAAGAGGCAGTATCATTCTAGTTATCATCATCTCGATCATGCTA ACACTAGTTTTACTCACGTTGATCATAGTGTTGATCTTCCTGATGATGTTCTTGATATGATTTTCTCTTTCTTGCCTATCAAAAAAGCTATGCAGATTGG AATTCTATCGACGAGATTCAAGAATTCTTGGAACTTCAATCGTAGATTAGACTTTGATAATGATTTTGCAAGGGGTCGTAGTCCTGAAGATTTTAAATCT ATAGTTAATAAGGTTTTTGATCGCCATGCAGGCTCGAGAATTTTAAGTTTTCGATTATGTTTTGATCCAAACAGAGAGGAATTATTGGTCGAGAAGTGGA TCAGGAAATCCATTGAAAAGGGTGTTGAAGAACTCGATTTGGAATTTTATCAAAGCGGAAATGTTTTTGAAGGAAGATGGCCTTTTAAACTCAATTCTGA TGTTTATGAAGCTGAGTCCTTGAAGATTTTGAAGCTTACTTTGTGTCAACTTGATCTTCCACCAAAGTTGAAAGGTCTGCATGTTTTGAACACTCTTGTT CTCAGAAAGATCATCATAACCCCAACATTGATAGATACTTTATTTCAGAATTGCTTCTTCCTTGAGACTCTAGATTTAGCACATTGTCATAGGATTTTTC ATTTGAAAATCTTTGCCCAAAAGACGTTTAAGGTGTTAAAGGTCGGAGATTGCCAGGAGATTCTGAGGATTTACATTGATGCACCAAATCTACGTTCATT CCACTATTGTGGACATGTTTGTTTTATCAAATTTAACAGCGTCCCTCAATTGAAAGATGTGATGCTCAGTTTCAGACCTTCAAAGGGCTTTACAGAGACT TTTCGAGTGAGAAATCTTGTCTATGATCTCCACCCTATTCAAGTTCTCACCACTACTAGTACTTTTCTTGAGGGCCTGTCTCCAAAGTTTATTGGAGGAA AACTGAGGGAGATGCAATTCTTTTTTGGGAATTTGAAAGAATTTCATTTGATCATGGAAGGCGCAATTTACTGTAATCCTTATGATATTATTTCTTTCCT GAAGCATTGCCCTAGCCTGGAGAAGATATTCATCGATCTCAAAGATTTTTGCTTCGTACGTGGGCCGTATTGGGAATTGCATAATCGACAATCTTTCCAG AAATACAGCGCATCCTTTGACTGCCTGAAGTTCATCAAACTGCCAGGATTTAAGTTTCAGAAAGATGAACTAATGCTGGTGAAGTTTTTCCTGGAGAGGG CAATTTTCCTGGAGAAACTAGTGCTGGTCACTCCCAAGTCTAGACATGCCAGAGTTCTTACACCGAATTTACAAGCGTATTATCAATATCTGCAGTCTTG GAAAGCATCTCCAGGAGCCCAAATAGCTGTGTTTGAGCACTTGAATGACACTTCTGTTTGTCCAATGCACTCAAAGACCTGGTACTAG
AA sequence Show only first row Show all	>Potri.011G042900.1 pacid=42780449 polypeptide=Potri.011G042900.1.p locus=Potri.011G042900 ID=Potri.011G042900.1.v4.1 annot-version=v4.1 MASPERESQTFLQISRKRLKRQYHSSYHHLDHANTSFTHVDHSVDLPDDVLDMIFSFLPIKKAMQIGILSTRFKNSWNFNRRLDFDNDFARGRSPEDFKS IVNKVFDRHAGSRILSFRLCFDPNREELLVEKWIRKSIEKGVEELDLEFYQSGNVFEGRWPFKLNSDVYEAESLKILKLTLCQLDLPPKLKGLHVLNTLV LRKIIITPTLIDTLFQNCFFLETLDLAHCHRIFHLKIFAQKTFKVLKVGDCQEILRIYIDAPNLRSFHYCGHVCFIKFNSVPQLKDVMLSFRPSKGFTET FRVRNLVYDLHPIQVLTTTSTFLEGLSPKFIGGKLREMQFFFGNLKEFHLIMEGAIYCNPYDIISFLKHCPSLEKIFIDLKDFCFVRGPYWELHNRQSFQ KYSASFDCLKFIKLPGFKFQKDELMLVKFFLERAIFLEKLVLVTPKSRHARVLTPNLQAYYQYLQSWKASPGAQIAVFEHLNDTSVCPMHSKTWY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61330			FBD, F-box and Leucine Rich Re...		Potri.011G042900 [exp]	0	1
AT3G11690			unknown protein		Potri.006G200100 [exp]	1.00	0.9128
AT1G47410			unknown protein		Potri.014G032300 [exp]	6.16	0.8531
AT3G15810			Protein of unknown function (D...		Potri.006G067000 [exp]	6.48	0.8835
AT2G46690			SAUR-like auxin-responsive pro...		Potri.015G006800 [exp]	7.93	0.8711
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184900 [exp]	9.48	0.8826
AT4G18530			Protein of unknown function (D...		Potri.003G003100 [exp]	9.53	0.8636
AT5G42720			Glycosyl hydrolase family 17 p...		Potri.014G183000 [exp]	10.77	0.8818
AT5G36000			unknown protein		Potri.014G098300 [exp]	11.22	0.8761
AT2G20430		RIC6	ROP-interactive CRIB motif-con...		Potri.002G035500 [exp]	12.44	0.8794
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182800 [exp]	13.19	0.8790

Compare expression of checked genes

Potri.011G042900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.