Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21520 602 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 66 / 3e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 62 / 6e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 62 / 7e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 61 / 8e-10 PRL1 pleiotropic regulatory locus 1 (.1) AT1G61210 59 / 5e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 57 / 9e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 56 / 3e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 51 / 6e-07 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034600 [exp] 394 / 1e-137 AT4G21520 334 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 60 / 2e-09 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 57 / 1e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 56 / 4e-08 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.008G002300 [exp] 56 / 5e-08 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G136000 [exp] 54 / 2e-07 AT4G03020 741 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.018G020200 [exp] 53 / 2e-07 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.015G041600 [exp] 51 / 9e-07 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 50 / 1e-06 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011253 [exp] 621 / 0 AT4G21520 596 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018434 [exp] 369 / 6e-126 AT4G21520 357 / 2e-121 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016865 [exp] 102 / 8e-26 AT4G21520 95 / 7e-24 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 64 / 1e-10 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 64 / 1e-10 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 58 / 1e-08 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10037500 [exp] 57 / 1e-08 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10007449 [exp] 57 / 2e-08 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10006511 [exp] 56 / 2e-08 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10041007 [exp] 55 / 9e-08 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.011G043000.1 pacid=42782293 polypeptide=Potri.011G043000.1.p locus=Potri.011G043000 ID=Potri.011G043000.1.v4.1 annot-version=v4.1 ATGGAAGAGGAAGCAGACCAAGAACATGAACATGAACATGAACAAGAACAAGAGCAAGAACACATTTCACCCACCGCAACCACTCAACAAGACTACACAT GGCCTGTAATTAGATATAATTTGCCCCCACAAAGAACCCATCATTTCTTTAAACAATTCAGGACAAGCCCTAACAATTTCCTGAAAGGCATTAAATGGTC TCCTGACGGGTCTTGTTTTTTAACAAGTTCCGAGGACAATACCTTGCATTCGTTCTCATTACCAGATAATGGTAGTGGCAGTGATGCTGATGGGTGCTGT TTAGCTATTGATGAAGATTCATATGATGCAAGTCTTATTGTGAAGGAAGGGGAGTCTGTCTATGACTACTGTTGGTATCCTTATATGACTGCTTCAGATC CTGTTAGCTGTGTATTTGCTACTACAACTCGTGACCATCCAATTCATCTTTGGGATGCTACATCTGGCCTGCTGCGCTGCACATATCGTGCTTATGATGC TGTGGATGAAATAACTGCTGCCATTTCAATTGCATTTAACCCAGCTGGAACTAAGATATTTGCTGGATACAATAAATCTATCAGAGTCTTTGATATACAT CGTCCTGGTAGAGATTTTGCACAGTATTCGACTATTCAAGGAAATAAAGAAGGACAAACAGGTATAATATCTGCAGTTGCCTTTTCTCCAACTCACACTG GAATGCTAGCTACTGGTTCTTACAGCCAGACAACTGCAATCTATAGGGAAGACAATATGGAACTCTTGTACGTTTTACATGGCCAAGAAGGTGGGATTAC ACATGTCCAGTTCTCAAAGGATGGAAACTATCTTTATACTGGAGGCAGGAAGGACCCCTATATCTTGTGCTGGGATATACGGAAAGCTGTTGAAGTCGTG TACAAATTGTATAGATCCTCAGAATACACCAACCAGCGGATATTTTTTGATATTGAGCCCCTTGGCCGACATCTTGCAACAGGTGGTCAGGATGGTTTGG TTCATATATATGATCTACAAAATGGGCAGTGGATTTCTGGATTTCAGGCTGCAACAGACACGGTTAATGGTTTCGCTTTCCACCCATTCCTTCCTATGGC AGTCTCTTCATCAGGGCACCGAAGATTTAAAGTTCCTGATGGCTGTGATGAGAATTTGCCTTTGACTGGTTATGAGAACTGTGCCTCCGTGTGGAATTTC TCCTGTGCTGCTTCAATGGAAGAAGATGGCATCAACATCGATGGTGGTGATTTTACTCAATCTGAAAATGAAATCCTCCACCAGGATCCTTGA
AA sequence Show only first row Show all	>Potri.011G043000.1 pacid=42782293 polypeptide=Potri.011G043000.1.p locus=Potri.011G043000 ID=Potri.011G043000.1.v4.1 annot-version=v4.1 MEEEADQEHEHEHEQEQEQEHISPTATTQQDYTWPVIRYNLPPQRTHHFFKQFRTSPNNFLKGIKWSPDGSCFLTSSEDNTLHSFSLPDNGSGSDADGCC LAIDEDSYDASLIVKEGESVYDYCWYPYMTASDPVSCVFATTTRDHPIHLWDATSGLLRCTYRAYDAVDEITAAISIAFNPAGTKIFAGYNKSIRVFDIH RPGRDFAQYSTIQGNKEGQTGIISAVAFSPTHTGMLATGSYSQTTAIYREDNMELLYVLHGQEGGITHVQFSKDGNYLYTGGRKDPYILCWDIRKAVEVV YKLYRSSEYTNQRIFFDIEPLGRHLATGGQDGLVHIYDLQNGQWISGFQAATDTVNGFAFHPFLPMAVSSSGHRRFKVPDGCDENLPLTGYENCASVWNF SCAASMEEDGINIDGGDFTQSENEILHQDP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21520			Transducin/WD40 repeat-like su...		Potri.011G043000 [exp]	0	1
AT1G14990			unknown protein		Potri.008G129900 [exp]	3.60	0.8825
AT3G06790			plastid developmental protein ...		Potri.010G007200 [exp]	5.47	0.8579
AT3G18760			Translation elongation factor...		Potri.018G113200 [exp]	11.22	0.8349
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Potri.004G000600 [exp]	13.60	0.8669
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Potri.010G160800 [exp]	14.42	0.8381
AT4G25630		ATFIB2, FIB2	fibrillarin 2 (.1)		Potri.012G144800 [exp]	15.87	0.8174
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	16.97	0.8716
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Potri.001G071700 [exp]	18.43	0.8140
AT5G62290			nucleotide-sensitive chloride ...		Potri.012G128500 [exp]	20.83	0.8547
AT5G41650			Lactoylglutathione lyase / gly...		Potri.003G135100 [exp]	21.54	0.7935

Compare expression of checked genes

Potri.011G043000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.