Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATMRP12.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30420 2090 / 0 ATMRP12, ABCC11 ATP-binding cassette C11, multidrug resistance-associated protein 12 (.1) AT1G30410 2090 / 0 ATMRP13, ABCC12 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) AT2G34660 2014 / 0 EST4, ATMRP2, ABCC2, AtABCC2 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) AT1G30400 2013 / 0 ATABCC1, EST1, ATMRP1 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, Arabidopsis thaliana ATP-binding cassette C1, ATP-binding cassette C1, multidrug resistance-associated protein 1 (.1.2) AT1G04120 716 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G60160 694 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT2G47800 682 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G62700 677 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G59140 668 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G21250 644 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034800 [exp] 2652 / 0 AT1G30410 2242 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.004G034700 [exp] 2618 / 0 AT1G30410 2216 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.011G091200 [exp] 2120 / 0 AT2G34660 2491 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Potri.014G180100 [exp] 724 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Potri.012G033600 [exp] 697 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.014G193400 [exp] 684 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.015G023800 [exp] 683 / 0 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.003G182601 [exp] 680 / 0 AT2G07680 1759 / 0.0 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) Potri.014G130500 [exp] 680 / 0 AT3G62700 2059 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023275 [exp] 2135 / 0 AT2G34660 2553 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10038530 [exp] 2132 / 0 AT2G34660 2543 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10036153 [exp] 1571 / 0 AT2G34660 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10022858 [exp] 721 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10039320 [exp] 704 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10027567 [exp] 699 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10018027 [exp] 681 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10011498 [exp] 680 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10042023 [exp] 673 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10023139 [exp] 659 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.011G043100.2 pacid=42781746 polypeptide=Potri.011G043100.2.p locus=Potri.011G043100 ID=Potri.011G043100.2.v4.1 annot-version=v4.1 ATGGGTTTGGAGGCATTGGTTTGGTATTGTCGACCTGTGCCAAATGGGGTTTGGGCAACAAAAGTGGATAATGCATTTGGTGCTTACACACCCTGTGTTG TTGACTCCCTAGTCATTTGCATTTCTCATCTGGTTCTTCTTGGCCTTTGTTTGTATCGAATATGGTTGATTACTGACAAAAATTCCAAAGCTCAACACTA TTGTCTCAGGACAAATTACTATAATTACTCGTTGGGATTGCTGGCTGCTTATTGCACAGTCCAGCCTTTATTCAGGTTGTTTATGAATGTTTCAATCTTC AATCTGGATGGGCAGACTGCTCTCGCTCCCTTTGAGATGGTCTCCTTGATTGTTGAGGCCCTTTCCTGGTGCTCCACTCTTATTATGATTGGTTTGGAAA CAAGAATATACATTCAACAGTTTCGATGGTATGTGCGGTTTGGAGTCATTTATGTGTTGGTAGGGGAAGCGGCAATGCTCAATCTCATTCTGTCAGTGAG TGATAATTACGACAGTAGATTTATATTCTATATGTATTTGAGCACAGTTTTCTGCCAGGTTTTGTTTGGGATACATCTACTTGTTTATATTCCCAATTTG GATCCTTGTTCAGATTATGTTATGATGGAACCTGAGTCTCCTGATAATAGTGCATATGAAGCACTTCCTGGAAGAGAGCAAATATGTCCCGAGAGGAATG CCACCTTATTTTCTAGAATATTTTATTGGTGGTTGACTCCACTCATGAAGCAAGCCCATAAAAGACCTATTAGTGAAAAGGATGTTTGGAAGCTAGACAC ATGGGACCAGACTGAGACATCGATGAACAAGTTCCAGACTTGTTGGGTTGAAGAATCTCAAAGGCCAAAGCCATGTCTTTTAAGAGCACTAAACAATAGT CTAGGGGGAAGGTTTTGGTTAGGAGGATTTTTTAAGATTGGCTATGATCTTTCTGAATTTGTGGGACCTGTTGTATTGAGCCACCTCCTGCAGTCGATGC AACGAGGAGATCCAGCCTGGATCGGTTATGTCTATGCCTTCGTAATTTTCCTTGGGATGTTGTTTAGTGCGCTATGCGAATCTCGGTATTACCAGAATGT TCTGCGTGTTGGTTTTCGGTTGCGGTCAACTTTGGTGGCTGGTATATTTCGTAAATCCTTGAAACTAACTCATGAGGGTCAAAAGAACTTTCCATCAGGG AAGATAACAAATATGATCACAACAGATGCTGATGTACTTCAGCAAATATGCCTACTACTTCATGGATTGTGGTCCGCGCCATTTTGCATCACCATGTCCA TGGTTCTCCTTTACCAGCAATTAGGTGTTGCTTCACTTTTTGGTTCGCTAGTGCTTGTTATCATGGTCCCTACACAAGCAATCTTGTTGAACAGAATGAC ACGACTAACTAAGGAAGGATTGCATAGGACAGACAAAAGAGTCAGCCTCATGAATGAAATCTTGGCTGCCATGGACACTGTGAAATGTTATGCATGGGAG AAGAGCTTTCAATTTAGGGTTCAAAGTGTGCGGAATGATGAGCTGTCCTTGTTTCGCAGTGCCCAATTACTATTTGCTTTCAACAGTTTTATGGTGAATA GCATTCCAGTTGTTGTGACACTTGTTTCATTCGGCACATTCACCTTGCTTGGTGGAGACTTGACCCCTGCAAAGGCTTTTACATCACTTTCTTTGTTTCA AGTGTTAAGATACCCTCTAAACATGCTTCCTAACTTACTGAGCCAGGTTGTAAATGCAAATATATCATTGCAACGCTTGGAGGAACTGTTTCTAGCTGAA GAGAGAATTTTAGCACCAAATCCACCTCTTGAACCAGGAATTCCAGCTATCTCAATTGAAAATGGGAACTTTTCATGGGATTTAAAGCTAGAAAATCCAA CGTTGACAAATATCAAATTAAACATACAAGTTGGCAGCTTAGTCGCAATCGTTGGTGGGACTGGAGAAGGAAAAACATCACTTATATCAGCAATGCTTGG AGAGCTGCCTCCTATGGAAGATGCATGTGTTGTTATAAGAGGGACTGTTGCATATGCTCCTCAAGTTCCATGGATCTTCAATGCTACTGTTCGTGACAAC ATATTATTTGGGTCAAAATATGAACCTTCACGATATGGGAAAGCTATTGATGTAACTGCATTACAACATGATCTTGACTTATTTGCAGGCCATGACCTCA CTGAGATAGGTGAAAGAGGAGTCAATATTAGTGGTGGGCAGAAGCAAAGAATTTCCATGGCCAGGGCTTTCTACTCCAATTCAGATATATACATATTCGA TGACCCTTTAAGTGCTTTAGATGCTCACGTTGCCCGACAGGTCTTTAACAGTTGTATTAAAGAAGGGTTGCAAGGAAAAACCAGGGTTCTTGTGACAAAC CAGCTACATTTCCTTCCACAAGTGGAAAAAATTATTCTTCTCAGTGAAGGTATGATTAAAGAGGAGGGAACCTTCGAGGAACTCTTTAAAAACAGCGAAC TATTCCAGAAGCTGATGGAAAATGCAGGGAAAATGGAAGAGCAAGTGAAAGAAAAGGAGAAAAGTGACAATTTGGACCACAAAAGCTCAAAAGCAGAAGC TAATTGGGAAAATGAGTTGCCACAAAAGGCAGCCTCTACAATGAAAGGGAAAGAAGGGAAGTCTATTCTCATCAAGCAAGAAGAACGAGAAAGAGGTGTT GTCAGTTGGAATGTTTTGATAAGGTACAACAACGCATTAGGAGGTGTATGGGTGGTTTCAATACTTTTTCTGTGCTACTTATTAACTGAAGTTTTTCGAG TTTCAAGAAGTACATGGTTGAGTTTTTGGACAAATCAAAGCACTTTGGAGAGTTATAGGCCAGGATACTTCATTTTCGTGTATGGACTTCTATCATTTGG TCAGGTGACTGTGACACTAGCAAACTCTTATTGGTTAATCAGTTCAAGTCTTCATGCGTCCAAAAGACTTCATGATGCCATGCTAGATTCCATCCTACGA ACTCCAATGCTATTCTTCCACACCAACCCAACTGGGAGGATAATCAATAGGTTTGCGAAGGATGTAGGTGAAATAGATCGTAACGTTGCCAATTCTGCCA ACAATTTTCTAAACCTAGCTTGGCAGTTGCTTTCAACTTTTGTGCTGATAGGCACTGTGAGCACAATATCATTGTGGGCCATAATGCCACTTCTGATCTT ATTTTATTCAGCCTATCTATATTATCAGAATACATCCCGTGAAGTGAAACGTCTGGATTCCATCACCAGGTCTCCAGTTTATGCACAGTTTGGAGAAGCA TTAAATGGTTTGTCAAGTATTCGTGCTTATAAAGCATATGATTGGATGTCCATCATCAATGGGAAGTATATGGACAATAATATTAGATTTAGTCTCGTAA CTATTAGTTCAGATGGTTGGCTTGCCATAAGGTTGGTAACTTTAGGAGGGATGATGATTTGGTTGATAGCGTCATTTTCAGTTTTGGGGAATGGAAGAAC TGAAAATCATGTGGGATTTGCATCTATAATGGGTCTACTTCTTAGTTACACTTCGAACATCACTGATTTGTTGAGTAATGTTCTAAGACAAGCTAGTAAA GCTGAAAATAGCTTAAACTCTGTTGAGCGTGTTTCCACATATATAGATTTACCCTCCGAAGCTCCAGCCATAGACAAGAACAATCGTCCTCCTTCTTCTT GGCCTTTGTCAGGATTAATTAAATTTACGGATGTTGTTCTACGTTACAGGCCCGAGCTTCCTCCAGTCTTACATGGTTTGTCCTTTGCAGTCTCACCAAG TGAAAAGCTAGGAATAGTCGGAAGAACTGGAGCTGGGAAATCTAGCATGTTAAATGCATTGTTCCGTATCGTAGAACTGGAAAGAGGAGAAATCACCATT GATGGTTGTGACATTACTAAGTTCGGACTGACAGATTTGAGGAGAGCTCTCAGTATCATACCACAATCACCAGTTCTCTTCTCAGGGACTGTGCGATTTA ATCTTGATCCATTCAGTGAACACAATGATGCTGACCTATGGAAGGCTTTAGAGAGGGCACATTTGAAGGATGCTGTTAGAAATAGTTCTTTTGGTCTGGA TGCTCAGGTTTTTGGAGGGGAGAGTTTTAGTGTTGGACAGAGGCAACTACTAAGTCTCGCTCGAGCACTGCTGCGGAGATCTAAGATTCTTGTTCTTGAT GAAGCTACTTCTTCTGTTGATGTTAGAATTGATGCTCTTATCCAGAAAACCATCCGAGAAGAATTCAGATCCTGCACAATGCTAATTATCGCTCATAGAC TAAATACCATTATTGACTGTGACAGAATTCTTGTGCTTGAGGCTGGTCAGGTTTTAGAACATTCTACCCCAGAGGAACTGCTATCGAACGAAGGAAGCGC ATTCTCTAGGATGGTTCAAAGTACAGGACCAGCAAATGCACAGTACTTGCATAGCCTGGTGTTTGAAAGCAAAGAGAACAAGTTAATGTTTATACATTCC TGA
AA sequence Show only first row Show all	>Potri.011G043100.2 pacid=42781746 polypeptide=Potri.011G043100.2.p locus=Potri.011G043100 ID=Potri.011G043100.2.v4.1 annot-version=v4.1 MGLEALVWYCRPVPNGVWATKVDNAFGAYTPCVVDSLVICISHLVLLGLCLYRIWLITDKNSKAQHYCLRTNYYNYSLGLLAAYCTVQPLFRLFMNVSIF NLDGQTALAPFEMVSLIVEALSWCSTLIMIGLETRIYIQQFRWYVRFGVIYVLVGEAAMLNLILSVSDNYDSRFIFYMYLSTVFCQVLFGIHLLVYIPNL DPCSDYVMMEPESPDNSAYEALPGREQICPERNATLFSRIFYWWLTPLMKQAHKRPISEKDVWKLDTWDQTETSMNKFQTCWVEESQRPKPCLLRALNNS LGGRFWLGGFFKIGYDLSEFVGPVVLSHLLQSMQRGDPAWIGYVYAFVIFLGMLFSALCESRYYQNVLRVGFRLRSTLVAGIFRKSLKLTHEGQKNFPSG KITNMITTDADVLQQICLLLHGLWSAPFCITMSMVLLYQQLGVASLFGSLVLVIMVPTQAILLNRMTRLTKEGLHRTDKRVSLMNEILAAMDTVKCYAWE KSFQFRVQSVRNDELSLFRSAQLLFAFNSFMVNSIPVVVTLVSFGTFTLLGGDLTPAKAFTSLSLFQVLRYPLNMLPNLLSQVVNANISLQRLEELFLAE ERILAPNPPLEPGIPAISIENGNFSWDLKLENPTLTNIKLNIQVGSLVAIVGGTGEGKTSLISAMLGELPPMEDACVVIRGTVAYAPQVPWIFNATVRDN ILFGSKYEPSRYGKAIDVTALQHDLDLFAGHDLTEIGERGVNISGGQKQRISMARAFYSNSDIYIFDDPLSALDAHVARQVFNSCIKEGLQGKTRVLVTN QLHFLPQVEKIILLSEGMIKEEGTFEELFKNSELFQKLMENAGKMEEQVKEKEKSDNLDHKSSKAEANWENELPQKAASTMKGKEGKSILIKQEERERGV VSWNVLIRYNNALGGVWVVSILFLCYLLTEVFRVSRSTWLSFWTNQSTLESYRPGYFIFVYGLLSFGQVTVTLANSYWLISSSLHASKRLHDAMLDSILR TPMLFFHTNPTGRIINRFAKDVGEIDRNVANSANNFLNLAWQLLSTFVLIGTVSTISLWAIMPLLILFYSAYLYYQNTSREVKRLDSITRSPVYAQFGEA LNGLSSIRAYKAYDWMSIINGKYMDNNIRFSLVTISSDGWLAIRLVTLGGMMIWLIASFSVLGNGRTENHVGFASIMGLLLSYTSNITDLLSNVLRQASK AENSLNSVERVSTYIDLPSEAPAIDKNNRPPSSWPLSGLIKFTDVVLRYRPELPPVLHGLSFAVSPSEKLGIVGRTGAGKSSMLNALFRIVELERGEITI DGCDITKFGLTDLRRALSIIPQSPVLFSGTVRFNLDPFSEHNDADLWKALERAHLKDAVRNSSFGLDAQVFGGESFSVGQRQLLSLARALLRRSKILVLD EATSSVDVRIDALIQKTIREEFRSCTMLIIAHRLNTIIDCDRILVLEAGQVLEHSTPEELLSNEGSAFSRMVQSTGPANAQYLHSLVFESKENKLMFIHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.011G043100 [exp]	0	1	Pt-ATMRP12.3
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.013G088600 [exp]	1.73	0.7961	XPO1.2
					Potri.002G100700 [exp]	2.64	0.7598
AT5G50780			Histidine kinase-, DNA gyrase ...		Potri.012G102800 [exp]	13.19	0.7793
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Potri.008G188150 [exp]	15.71	0.7420
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.011G163600 [exp]	17.20	0.7547
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Potri.002G041300 [exp]	17.60	0.7812
AT5G36930			Disease resistance protein (TI...		Potri.001G028750 [exp]	17.83	0.6870
AT1G17550		HAB2	homology to ABI2 (.1)		Potri.001G198501 [exp]	18.49	0.6854
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.018G038300 [exp]	19.77	0.7164
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.017G125500 [exp]	20.07	0.7027

Compare expression of checked genes

Potri.011G043100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.