Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CBP60.12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57580 771 / 0 Calmodulin-binding protein (.1) AT2G18750 752 / 0 Calmodulin-binding protein (.1.2.3) AT4G25800 721 / 0 Calmodulin-binding protein (.1.2) AT2G24300 611 / 0 Calmodulin-binding protein (.1.2) AT4G31000 509 / 5e-175 Calmodulin-binding protein (.1.2) AT5G62570 318 / 1e-101 Calmodulin binding protein-like (.1.2) AT1G73805 290 / 2e-91 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 243 / 5e-72 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035100 [exp] 1118 / 0 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 1008 / 0 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.018G095300 [exp] 835 / 0 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 649 / 0 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 634 / 0 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.015G071800 [exp] 385 / 1e-126 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 366 / 3e-119 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.012G054900 [exp] 352 / 1e-115 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.015G045300 [exp] 345 / 2e-112 AT1G73805 414 / 1e-141 SAR Deficient 1, Calmodulin binding protein-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018437 [exp] 856 / 0 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10011248 [exp] 849 / 0 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10001436 [exp] 746 / 0 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 734 / 0 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10019056 [exp] 624 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10036301 [exp] 613 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10020686 [exp] 327 / 2e-103 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10029861 [exp] 322 / 2e-101 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10034121 [exp] 306 / 2e-96 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10043463 [exp] 252 / 2e-74 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [poplar] [flax] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Potri.011G043300.1 pacid=42781859 polypeptide=Potri.011G043300.1.p locus=Potri.011G043300 ID=Potri.011G043300.1.v4.1 annot-version=v4.1 ATGCAAACGAGGTATGTGGATAGATCGAATAGTATGGCGGCGGCGCCTGCCAGAGAGAAGAGAGGACTTGACTCAAGCACTGGTGGTGATGAAGGCCAGC CTGAAAGAAAAAGGCCTGCTTTAGCTAGTGTAATTGTTGAAGCTCTGAAGGTGGATAGCTTGCAGAGGCTTTGCTCGTCATTGGAGCCTATTCTTCGGCG CGTTGTTAGTGAAGAAGTAGAGCGTGCTTTAGCAAAAATTGGCCCTGCCAAGCTTACTGGACGGTCATCTCCTAAATGTATAGAAGGGCCTGGTGGAAGA AACTTGCAGTTGCACTTTAGGTCCAGGTTATCCCTCCCTCTGTTTACGGGCGGGAAAGTAGAAGGGGAGCAGGGTGCTGCTATCCATATTGTGTTGATTG ATGGAAACACAGGCCATGTTGTCACTTCTGGTCCAGAATCCTCAGTAAAGCTGGATGTTATTGTGCTTGAAGGTGATTTCAACAATGAAGATGATGATAA TTGGACTCAAGAGGAATTTGAGTCTCATGTGGTTAAAGAACGTGAGGGCAAGAGACCACTTCTAACTGGGGATCTGCAAGTGACACTGAAAGAAGGTGTT GGAACTCTAGGCGAGCTGATATTTACTGACAACTCAAGCTGGATAAGGAGCAGGAAATTCAGGCTGGGGCTGAAGGTTGCCTCAGGCTGCTGTGAAGACA TTCGCATTCGTGAAGCAAAAACAGATGCCTTCACCGTTAAGGATCACCGTGGAGAATTATACAAGAAGCACTATCCACCAGCATTAAATGATGATGTTTG GAGATTGGAAAAGATTGGAAAAGATGGATCATTTCACAAGAGGCTGACCAAAGCTGGAATATATTCAGTTGAAGACTTCCTACGCCTAGTAGTTCGAGAC CCACAGAGGTTGCGAACTATTCTTGGGAGTGGCATGTCAAATAAAATGTGGGATAGTCTTGTTGAGCATGCAAAGACATGTGTTTTGAGCGGGAAACATT ATATCTACTATCCTGAGGATGCGAAGAATGTCGGCATTGTTTTTAACAATATCTATGAATTTAGTGGCTTAATTGCCAATGGAGAGTACTACTCATCTGG CTCTCTTTCTGACAATCAGAAGGTCTATGTTGATAGCTTGGTGAAGAAGGCATATGATAATTGGATGCATGTTATAGAGTATGATGGCAAATCCCTTCTA GATTTCAAGCAGAATCAGGGCATAGTTGCTTCACAAAATGATGTCCCATCTAGTCAACAAGAGTTTTTGAACTCATATGATCATCAGGTTACTTTACCAA TCATGTCAGTTCCAGTCCCTTCAGAGCAGCCTGTTATGGACTCAGGTCCCATTGTTGGAGGTTATAACAATGATATGGCTGCGAGGTTCTCAATACATTC ACAGAATGGAAATCTCAACACCCCATTTCAATTCGATGCCGCTTCAATAACCTTACAGAATCCTATGGTCAATACTTCACAGCAAATCCAGGTTCCAGGA ACTGACAATTTACTAGCTCTTGCCCCCCCACAGTCTTCTATGTCAGGCTTTCAGAGTTTTGGCACATTGAATCTTAATTCATACGGGGGAACTGAGGACT ACTTTTCAGAGGAGGAGATTCGTACAAGAAGTCATGAGATGCTTGAAAATGAAGATATGCAAAATCTTCTTCGTGGATTTCACATGGGAGGCCAGGGTCC CTCCTCCTTCAATGTCACTGAAGATGGTTATCCTTACTCATCATACATGCCATGCCCATCTCCAAGCTACTGCTTTGAAGATGATCCATCTCGTTCATCA GGCAAAGCTGTTGTCGGATGGCTGAAGCTCAAGGCGGCCCTGAGATGGGGCATCTTTGTGAGGAAGAAGGCTGCTGAGAGGCGAGCACAGCTCGTCGAGT TAGATGATTCTTAG
AA sequence Show only first row Show all	>Potri.011G043300.1 pacid=42781859 polypeptide=Potri.011G043300.1.p locus=Potri.011G043300 ID=Potri.011G043300.1.v4.1 annot-version=v4.1 MQTRYVDRSNSMAAAPAREKRGLDSSTGGDEGQPERKRPALASVIVEALKVDSLQRLCSSLEPILRRVVSEEVERALAKIGPAKLTGRSSPKCIEGPGGR NLQLHFRSRLSLPLFTGGKVEGEQGAAIHIVLIDGNTGHVVTSGPESSVKLDVIVLEGDFNNEDDDNWTQEEFESHVVKEREGKRPLLTGDLQVTLKEGV GTLGELIFTDNSSWIRSRKFRLGLKVASGCCEDIRIREAKTDAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLTKAGIYSVEDFLRLVVRD PQRLRTILGSGMSNKMWDSLVEHAKTCVLSGKHYIYYPEDAKNVGIVFNNIYEFSGLIANGEYYSSGSLSDNQKVYVDSLVKKAYDNWMHVIEYDGKSLL DFKQNQGIVASQNDVPSSQQEFLNSYDHQVTLPIMSVPVPSEQPVMDSGPIVGGYNNDMAARFSIHSQNGNLNTPFQFDAASITLQNPMVNTSQQIQVPG TDNLLALAPPQSSMSGFQSFGTLNLNSYGGTEDYFSEEEIRTRSHEMLENEDMQNLLRGFHMGGQGPSSFNVTEDGYPYSSYMPCPSPSYCFEDDPSRSS GKAVVGWLKLKAALRWGIFVRKKAAERRAQLVELDDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	0	1	CBP60.12
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.009G066100 [exp]	1.00	0.9510	Pt-MPK3.2
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	2.00	0.9301
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.005G113600 [exp]	2.00	0.9337	CPK18
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	3.00	0.9327	Pt-CRCK3.2
					Potri.018G078801 [exp]	4.24	0.9184
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	5.91	0.9246
AT4G23810	WRKY	ATWRKY53, WRKY5...	WRKY family transcription fact...		Potri.014G096200 [exp]	5.91	0.9096
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Potri.003G138600 [exp]	6.32	0.9078	Pt-WRKY53.1
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.009G167400 [exp]	8.12	0.8811
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.016G128300 [exp]	10.39	0.9083	WRKY33.1

Compare expression of checked genes

Potri.011G043300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.