Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21540 652 / 0 SPHK1 sphingosine kinase 1 (.1.2.3) AT4G21534 629 / 0 SPHK2 sphingosine kinase 2, Diacylglycerol kinase family protein (.1) AT5G23450 111 / 7e-26 ATLCBK1 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) AT5G51290 68 / 5e-12 Diacylglycerol kinase family protein (.1) AT2G46090 48 / 1e-05 Diacylglycerol kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G255600 [exp] 99 / 1e-21 AT5G23450 1011 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.008G002100 [exp] 97 / 4e-21 AT5G23450 995 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.004G233300 [exp] 68 / 6e-12 AT5G51290 726 / 0.0 Diacylglycerol kinase family protein (.1) Potri.002G162900 [exp] 47 / 2e-05 AT2G46090 492 / 3e-175 Diacylglycerol kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011246 [exp] 684 / 0 AT4G21540 588 / 0.0 sphingosine kinase 1 (.1.2.3) Lus10018439 [exp] 677 / 0 AT4G21540 578 / 0.0 sphingosine kinase 1 (.1.2.3) Lus10017366 [exp] 96 / 1e-20 AT5G23450 1076 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10010161 [exp] 96 / 1e-20 AT5G23450 993 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10016714 [exp] 78 / 5e-15 AT5G51290 635 / 0.0 Diacylglycerol kinase family protein (.1) Lus10036388 [exp] 51 / 1e-06 AT2G46090 439 / 9e-155 Diacylglycerol kinase family protein (.1) Lus10007917 [exp] 49 / 7e-06 AT2G46090 453 / 2e-160 Diacylglycerol kinase family protein (.1) Lus10027086 [exp] 46 / 8e-05 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00781 [poplar] [flax] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.011G043500.1 pacid=42782288 polypeptide=Potri.011G043500.1.p locus=Potri.011G043500 ID=Potri.011G043500.1.v4.1 annot-version=v4.1 ATGGAGAATCAACAAGGAGACAGCTTAATAATATCAGACCAGGTAAAGGTCAACGGAAATCTAACCCCGTTAACTCTAACAACAGAAGGAAAGCTCCAGT GGACGACGGAGAAAGGTCAACATAGTCTGACCGTGGAAAAAGAGGTGCTTGGATTCACAATTCAAGGATCCAAAATAATAATCAAAGCAGTTACAGAAAA ACGAGACGGAATCTTCTGTTCCGCATCCGCAGGAGGAGGAGCTCTGGCGAGGAAGGATTTTGTTTTTGAACCGTTAAGTGATGAATCACTGCACCTTTGG TGTCAACATCTCCGTGATTACATTAATTCTTTAGGGAGGCCGAAGAGGTTGTTTATATTTGTCAATCCATTTGGAGGGAAGAAATCGGCTTTGAAGATAT ATTTTGATGTGGTTAAACCTTTGCTTGAAGATGCTGATGTCCAAATTACAGTTCAAGAAACTAAATATCAGCTCCATGCTAAGGAGGTTGTTCGCGCGAT GGACCTTACGAAATATGATGGTATTGTTTGTGTCAGTGGAGATGGTATACTCGTTGAGGTGGTAAATGGACTTTTAGAAAGAGAAGATTGGAATGCTGCA ATAAAGATGCCTCTTGGAACGGTTCCTGCAGGTACAGGAAATGGCATGGTAAAGTCTACTCTGGATTCTGCTGGTGAACCATGTACAGCATCTAATGCTG TGGTTGCTATTATACGAGGCCATAAGTGCTCACTGGATGTAGCTACTATCTTGCAAGGAGATACCAAATTCTTTAGTGTCTTGATGTTTGCATGGGGTTT AGTGGCAGATATTGACATTGAGTCTGAGAAATACCGGTGGATGGGGAGTGCCCGTCTTGATTTCTATGGCCTTCAACGAATGTTATGTCTGAGGCAATAC AGTGGACGCATATCTTTTGTGCCTGCACCTGGCTTCGAAGCTTATGGGGAGCCGACCAGGTACAATGGTGAATTTACCAGCACACAGAGTAGTATCAATC CTGGCCAAGAGCAGCATGTTAAGGCTGAACAATACAGTTACCAGGGACCTGATGTTGACTTAACAAATCTGGAGTGGAGGACTATTAATGGACCGTTTAT ATCAGTCTGGCTTCATAATGTCCCTTGGGGTGGTGAAGGTACAATGGCAGCACCTGATGCCAAGTTCGCAGATGGTAATTTGGACCTGATCCTCATCAAG GATTGCCCGAAGTTGGGCTTGCTAGCATTGATGACCAATTTGAGCGATGGAGGTCATGTAAAATCACCACATGTCATGTATCTCAAGGTGAAAGCATTCA TTTTAGAGCCTGGTCAGCGCACCAAGGACCCGACCAGGGGAGGGATCATAGACATAGACGGTGAGGTCCTGGCCAGAGGAAATGGAACATACAAGCATGA TCAGAAGACGCTGATGACATATGATAAGCTTCAAATAACAATGGATCAAGGTTTGGCCACTCTATTTTGCCCTGTACAACAATAG
AA sequence Show only first row Show all	>Potri.011G043500.1 pacid=42782288 polypeptide=Potri.011G043500.1.p locus=Potri.011G043500 ID=Potri.011G043500.1.v4.1 annot-version=v4.1 MENQQGDSLIISDQVKVNGNLTPLTLTTEGKLQWTTEKGQHSLTVEKEVLGFTIQGSKIIIKAVTEKRDGIFCSASAGGGALARKDFVFEPLSDESLHLW CQHLRDYINSLGRPKRLFIFVNPFGGKKSALKIYFDVVKPLLEDADVQITVQETKYQLHAKEVVRAMDLTKYDGIVCVSGDGILVEVVNGLLEREDWNAA IKMPLGTVPAGTGNGMVKSTLDSAGEPCTASNAVVAIIRGHKCSLDVATILQGDTKFFSVLMFAWGLVADIDIESEKYRWMGSARLDFYGLQRMLCLRQY SGRISFVPAPGFEAYGEPTRYNGEFTSTQSSINPGQEQHVKAEQYSYQGPDVDLTNLEWRTINGPFISVWLHNVPWGGEGTMAAPDAKFADGNLDLILIK DCPKLGLLALMTNLSDGGHVKSPHVMYLKVKAFILEPGQRTKDPTRGGIIDIDGEVLARGNGTYKHDQKTLMTYDKLQITMDQGLATLFCPVQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Potri.011G043500 [exp]	0	1
AT4G37030			unknown protein		Potri.007G042400 [exp]	4.24	0.7194
AT3G14205			Phosphoinositide phosphatase f...		Potri.001G163900 [exp]	7.68	0.7302
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Potri.003G078300 [exp]	18.70	0.7012
AT5G60160			Zn-dependent exopeptidases sup...		Potri.015G092700 [exp]	19.62	0.7215
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G114400 [exp]	20.00	0.7217
AT5G36930			Disease resistance protein (TI...		Potri.019G001600 [exp]	20.44	0.7239
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123800 [exp]	23.36	0.7168	KUP10.3
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.006G132000 [exp]	23.49	0.6957
AT4G09760			Protein kinase superfamily pro...		Potri.002G063700 [exp]	24.16	0.7088
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Potri.009G078000 [exp]	28.93	0.6603

Compare expression of checked genes

Potri.011G043500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.