Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05000 364 / 5e-130 VPS28-2, VPS28-1 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) AT4G21560 360 / 3e-128 VPS28-1 vacuolar protein sorting 28, vacuolar protein sorting-associated protein 28 homolog 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035500 [exp] 394 / 8e-142 AT4G05000 366 / 8e-131 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011243 [exp] 376 / 9e-135 AT4G05000 383 / 1e-137 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) Lus10018442 [exp] 374 / 8e-134 AT4G05000 384 / 1e-137 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) Lus10027229 [exp] 49 / 2e-07 AT4G21380 54 / 7e-09 receptor kinase 3 (.1) Lus10027228 [exp] 0 / 1 AT4G05000 126 / 1e-50 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [poplar] [flax] VPS23_C PF03997 [poplar] [flax] VPS28 VPS28 protein
Representative CDS sequence Show only first row Show all	>Potri.011G043800.2 pacid=42782240 polypeptide=Potri.011G043800.2.p locus=Potri.011G043800 ID=Potri.011G043800.2.v4.1 annot-version=v4.1 ATGGAGGTCAAGCTATGGAACGACAAGCGCGAGAGAGAAATGTATGATAATTTTGCTGAGCTATATGCTATAATCAAAGCCACGGAGAAGCTTGAAAAGG GTTATGTTCGTGACATTATATCCTCATCTCAGTATGAAACTGAGTGCCAGAAACTCATTGCCCATTTCAAAACTTTGGCTTCCACCTTTAAAGACACAGT CCCTAGCATTGAGCGCTTTGCAGATACATACAAGATGGACTGCCCAGCTGCCATTAACAGGCTTGTGACCTCGGGGGTGCCTGCCACGGTGGAACACCGT GCTGCTGCAGCTGCCTCATCTACCACCTCAGCTGCCGTTGTGGCAGAGTGTGTTCAGAACTTCATCACAGCTATGGATTCGCTGAAGTTGAATATGGTGG CAGTGGACCAGGTGCATCCTTTGCTTTCAGATCTCTCAGCTTCACTGAACAAGTTGAGTATTTTGCCACCTGACTTTGAGGGCAAGACAAAGATGAAAGA ATGGATTTTGAGGTTGTCTAAGATGGGGGCAGCAGATGAGTTGACAGAGCAGCAGGCTCGGCAACTTCACTTTGATTTGGAGTCCTCATACAATTCATTT ATGGCAGCTTTGCCTAGTGCTGGCACTTGA
AA sequence Show only first row Show all	>Potri.011G043800.2 pacid=42782240 polypeptide=Potri.011G043800.2.p locus=Potri.011G043800 ID=Potri.011G043800.2.v4.1 annot-version=v4.1 MEVKLWNDKREREMYDNFAELYAIIKATEKLEKGYVRDIISSSQYETECQKLIAHFKTLASTFKDTVPSIERFADTYKMDCPAAINRLVTSGVPATVEHR AAAAASSTTSAAVVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLSASLNKLSILPPDFEGKTKMKEWILRLSKMGAADELTEQQARQLHFDLESSYNSF MAALPSAGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.011G043800 [exp]	0	1
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.004G035500 [exp]	1.00	0.8288
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.001G094900 [exp]	2.44	0.7967	Pt-UBC.7
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Potri.008G203400 [exp]	5.91	0.7560
AT2G17850			Rhodanese/Cell cycle control p...		Potri.005G111200 [exp]	6.92	0.7235
AT5G43150			unknown protein		Potri.001G037400 [exp]	10.00	0.7793
AT1G44770			unknown protein		Potri.005G176500 [exp]	10.00	0.7613
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.012G087000 [exp]	10.19	0.8077
AT4G02630			Protein kinase superfamily pro...		Potri.014G026100 [exp]	11.61	0.6993
AT1G69980			unknown protein		Potri.010G039466 [exp]	15.49	0.7417
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.006G139300 [exp]	23.87	0.7121

Compare expression of checked genes

Potri.011G043800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.