Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GAL1.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28470 993 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G36360 874 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 864 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 848 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 802 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 759 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 751 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G20710 744 / 0 BGAL7 beta-galactosidase 7 (.1) AT5G63810 738 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G56870 732 / 0 BGAL4 beta-galactosidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012400 [exp] 992 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.005G232600 [exp] 881 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 875 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 874 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 863 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 859 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.017G057900 [exp] 859 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.007G099800 [exp] 834 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.001G025800 [exp] 785 / 0 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006733 [exp] 1272 / 0 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10011237 [exp] 1169 / 0 AT2G28470 901 / 0.0 beta-galactosidase 8 (.1.2) Lus10037644 [exp] 888 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 885 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 872 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 870 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 852 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10016655 [exp] 844 / 0 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Lus10000271 [exp] 827 / 0 AT2G28470 1046 / 0.0 beta-galactosidase 8 (.1.2) Lus10028348 [exp] 825 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain CL0202 [poplar] [flax] GBD PF02837 [poplar] [flax] Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G044300.1 pacid=42781483 polypeptide=Potri.011G044300.1.p locus=Potri.011G044300 ID=Potri.011G044300.1.v4.1 annot-version=v4.1 ATGACCAGTGGTATTATGGGACGCAAGAATTCTTGTTTAGCATTGGTTTTGCTTGTTGTTTTAGTTTTTCAATGTGTTTGGGTTGAAAGAGTGTGGTGTG TTACAGTGACGTATGATCACAAAGCTCTGGTGATTGATGGAAAGAGAAGGGTTTTGCAGTCTGGTTCTATTCATTATCCTCGAACCACTCCTGAGGTGTG GCCAGAAATTATTAGGAAATCAAAGGAAGGGGGGCTGGATGTGATTGAGACTTATGTGTTTTGGAACTATCATGAGCCTGTGAGAGGACAGTACTACTTT GAAGGCCGGTTTGATTTAGTGCGGTTTGTGAAAACGGTTCAGGAAGCTGGTCTTTTTGTTCATCTGAGGATTGGCCCATATGCCTGTGCTGAATGGAATT ATGGGGGTTTCCCACTTTGGTTACATTTCATTCCTGGGGTTCAGTTTCGAACAAGTAATGATATATTTAAGAATGCAATGAAGAGTTTTCTGACAAAAAT TGTCGATCTAATGAAGGATGATAATCTTTTTGCATCACAAGGAGGACCAATCATTCTTGCTCAGGTTGAGAATGAATATGGAAATGTTCAATGGGCATAT GGGGTTGGTGGAGAATTATATGTCAAATGGGCTGCAGAAACTGCTATTAGTCTAAACACAACTGTACCTTGGGTGATGTGCGTACAAGAAGATGCTCCTG ATCCAGTTATAAACACATGCAATGGATTTTACTGTGACCAGTTTACCCCAAATTCCCCTTCCAAACCAAAAATGTGGACTGAGAACTATAGTGGATGGTT TCTTGCATTTGGCTATGCAGTTCCTTATCGACCTGTTGAGGACCTAGCATTTGCTGTTGCACGATTTTTTGAGTATGGAGGTTCTTTTCAAAACTATTAT ATGTATTTTGGTGGAACCAACTTTGGACGAACTGCGGGAGGTCCTTTGGTTGCAACAAGCTATGATTACGATGCCCCGATAGATGAATATGGTTTTATTA GACAGCCAAAGTGGGGCCACTTACGTGATTTGCACAGTGCAATAAAGCAGTGTGAAGAATATTTGGTCAGCTCAGATCCAGTTCACCAGCAGCTAGGCAA CAAGTTAGAGGCACATGTCTACTATAAGCATTCCAATGATTGTGCAGCCTTTCTTGCCAATTATGACAGTGGTTCAGATGCAAATGTCACATTTAACGGC AACACGTATTTTCTTCCTGCATGGTCTGTGAGCATACTTGCAGATTGCAAGAATGTCATTTTCAACACGGCTAAGGTTGTTACGCAAAGACATATAGGAG ATGCTTTGTTTTCCCGCTCCACCACTGTTGATGGAAATTTAGTGGCGGCATCACCATGGAGTTGGTATAAAGAGGAAGTGGGTATTTGGGGTAACAACTC TTTTACAAAGCCAGGTTTACTGGAGCAGATTAATACAACAAAAGATACCAGTGATTTTCTATGGTACTCAACCAGTCTTTATGTGGAAGCTGGACAAGAC AAAGAACACTTATTGAATATTGAGAGTTTGGGGCATGCAGCACTTGTTTTTGTTAACAAGAGATTTGTAGCTTTCGGATATGGCAATCATGACGATGCAA GCTTCTCACTCACTCGGGAAATTAGTCTTGAAGAAGGGAATAACACACTGGATGTTTTAAGCATGCTGATTGGTGTACAGAACTACGGACCATGGTTTGA TGTTCAAGGAGCTGGAATTCATTCTGTTTTTCTTGTTGACTTGCACAAGAGCAAGAAAGATCTCTCTTCCGGGAAATGGACCTACCAGGTGGGACTTGAA GGGGAATACCTTGGACTGGATAACGTCAGTCTTGCAAATAGTTCACTGTGGAGTCAGGGGACTTCTCTACCTGTTAATAAGAGCTTGATATGGTACAAGG CTACTATCCTTGCTCCTGAAGGGAACGGTCCCCTAGCCTTGAATCTAGCAAGCATGGGGAAGGGCCAGGCATGGATTAACGGGCAAAGCATAGGACGATA TTGGTCCGCCTATCTATCACCATCAGCCGGTTGCACCGACAATTGTGATTACAGAGGTGCTTACAATTCATTTAAATGCCAAAAGAAATGTGGTCAACCT GCTCAAACACTGTATCATATTCCACGCACTTGGGTTCATCCTGGTGAGAACCTACTGGTCCTACATGAAGAACTTGGAGGTGACCCTTCACAGATTTCTC TGCTCACACGAACTGGCCAAGATATATGCTCTATTGTATCAGAAGATGATCCTCCACCAGCTGATTCCTGGAAACCAAACTTAGAGTTCATGTCTCAAAG TCCAGAAGTTCGGCTGACCTGTGAACATGGATGGCACATTGCTGGTATCAACTTTGCTAGCTTTGGAACTCCTGAAGGAAAATGCGGAACGTTCACTCCA GGGAATTGTCATGCTGACATGTTAACAATTGTGAAGAAGGCTTGCATTGGCCATGAAAGATGTTCAATTCCTATATCAGCAGCTAAACTTGGTGACCCCT GTCCTGGAGTTGTAAAACGCTTCGTGGTTGAAGCTCTATGCAGTGAATGA
AA sequence Show only first row Show all	>Potri.011G044300.1 pacid=42781483 polypeptide=Potri.011G044300.1.p locus=Potri.011G044300 ID=Potri.011G044300.1.v4.1 annot-version=v4.1 MTSGIMGRKNSCLALVLLVVLVFQCVWVERVWCVTVTYDHKALVIDGKRRVLQSGSIHYPRTTPEVWPEIIRKSKEGGLDVIETYVFWNYHEPVRGQYYF EGRFDLVRFVKTVQEAGLFVHLRIGPYACAEWNYGGFPLWLHFIPGVQFRTSNDIFKNAMKSFLTKIVDLMKDDNLFASQGGPIILAQVENEYGNVQWAY GVGGELYVKWAAETAISLNTTVPWVMCVQEDAPDPVINTCNGFYCDQFTPNSPSKPKMWTENYSGWFLAFGYAVPYRPVEDLAFAVARFFEYGGSFQNYY MYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLRDLHSAIKQCEEYLVSSDPVHQQLGNKLEAHVYYKHSNDCAAFLANYDSGSDANVTFNG NTYFLPAWSVSILADCKNVIFNTAKVVTQRHIGDALFSRSTTVDGNLVAASPWSWYKEEVGIWGNNSFTKPGLLEQINTTKDTSDFLWYSTSLYVEAGQD KEHLLNIESLGHAALVFVNKRFVAFGYGNHDDASFSLTREISLEEGNNTLDVLSMLIGVQNYGPWFDVQGAGIHSVFLVDLHKSKKDLSSGKWTYQVGLE GEYLGLDNVSLANSSLWSQGTSLPVNKSLIWYKATILAPEGNGPLALNLASMGKGQAWINGQSIGRYWSAYLSPSAGCTDNCDYRGAYNSFKCQKKCGQP AQTLYHIPRTWVHPGENLLVLHEELGGDPSQISLLTRTGQDICSIVSEDDPPPADSWKPNLEFMSQSPEVRLTCEHGWHIAGINFASFGTPEGKCGTFTP GNCHADMLTIVKKACIGHERCSIPISAAKLGDPCPGVVKRFVVEALCSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.011G044300 [exp]	0	1	GAL1.6
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.002G019800 [exp]	3.16	0.9328
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	3.74	0.9218
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.018G152600 [exp]	6.00	0.9296
AT3G57030			Calcium-dependent phosphotries...		Potri.008G109966 [exp]	7.21	0.9263
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.004G216500 [exp]	7.21	0.9308
AT4G18830	OFP	ATOFP5, OFP5	ovate family protein 5 (.1)		Potri.015G004300 [exp]	8.83	0.9244
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	15.23	0.9147
					Potri.016G139350 [exp]	15.29	0.9107
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.005G059500 [exp]	15.49	0.9081
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.010G177100 [exp]	17.66	0.8975	AS2.1

Compare expression of checked genes

Potri.011G044300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.