Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21585 448 / 2e-160 ENDO4 endonuclease 4 (.1) AT4G21600 401 / 7e-142 ENDO5 endonuclease 5 (.1) AT4G21590 400 / 3e-141 ENDO3 endonuclease 3 (.1.2) AT1G68290 353 / 5e-123 ENDO2 ,ENDO 2 endonuclease 2 (.1) AT1G11190 300 / 6e-102 ENDO1, BFN1 ENDONUCLEASE 1, bifunctional nuclease i (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G123500 [exp] 348 / 3e-121 AT1G68290 412 / 1e-146 endonuclease 2 (.1) Potri.011G044500 [exp] 304 / 2e-103 AT1G11190 440 / 5e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018451 [exp] 429 / 8e-153 AT4G21585 408 / 2e-144 endonuclease 4 (.1) Lus10034336 [exp] 343 / 5e-119 AT1G68290 391 / 5e-138 endonuclease 2 (.1) Lus10011232 [exp] 346 / 4e-116 AT1G11190 441 / 6e-153 ENDONUCLEASE 1, bifunctional nuclease i (.1) Lus10018452 [exp] 307 / 7e-105 AT1G11190 440 / 3e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1) Lus10041437 [exp] 288 / 6e-98 AT1G68290 327 / 2e-113 endonuclease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0368 [poplar] [flax] PhosC-NucP1 PF02265 [poplar] [flax] S1-P1_nuclease S1/P1 Nuclease
Representative CDS sequence Show only first row Show all	>Potri.011G044400.1 pacid=42781819 polypeptide=Potri.011G044400.1.p locus=Potri.011G044400 ID=Potri.011G044400.1.v4.1 annot-version=v4.1 ATGGGGGTGTCTGGCCTGTTGTGGGCTGTGAGGGCGCTTGTTCTTCTTCAATTTGTTACTGGGATTCTTGGTTGGGGAAAGGAAGGTCATTATGCTACTT GCAAAATTGCAGAGGGGTATCTAACTGCAGAAGCTCTAGCTGCAGTGAAGGAATTGCTTCCAGAGTCTGCTGAAGGTGATCTTGCAAATGTTTGTTCTTG GCCTGATGAGATCCGATTCCACTATCACTGGAGTAGTGCTTTACACTATGTTGATACGCCAGATTTCAGGTGTAACTATGAATACTTTAGGGATTGTCAT GACTCTTCTGGACGTAAAGATAGATGTGTTACTGGAGCAATTTATAACTACACGAACCAACTTTTATCGTTATATCAGAATTCCAATTCAGAGTCAAACT ACAATTTGACGGAGGCACTTATGTTTTTATCACATTTTATTGGAGATGTACACCAGCCCCTGCATGTAGGTTTCCTTGGAGATTTGGGAGGAAACACAAT ACAAGTCCATTGGTACCGTAGGAAGTCAAACCTGCACCATGTATGGGACAACATGATTATTGAATCAGCCTTGAAGACATTCTACAGTTCAGATCTTGCG ACCATGATACGGGCCATTCAGAATAATATAACAGAAAATTGGTCCAATCAACAACCACTATGGGAGCATTGTGCACACAACCACACAGTCTGTCCAAACC CCTATGCTTCTGAAAGCATTAGTTTGGCATGCAAGTTTGCATACAAGAATGCCTCGCCTGGAAGCACTCTGGAAGATGATTACTTTCTTTCCCGGCTGCC CGTTGTGGAAAAGAGACTAGCCCAAGGGGGCATTCGGTTAGCTGCCACCCTGAACCGCATTTTTGCTTCTTACGTGAAAATTGCTCAAGCATGA
AA sequence Show only first row Show all	>Potri.011G044400.1 pacid=42781819 polypeptide=Potri.011G044400.1.p locus=Potri.011G044400 ID=Potri.011G044400.1.v4.1 annot-version=v4.1 MGVSGLLWAVRALVLLQFVTGILGWGKEGHYATCKIAEGYLTAEALAAVKELLPESAEGDLANVCSWPDEIRFHYHWSSALHYVDTPDFRCNYEYFRDCH DSSGRKDRCVTGAIYNYTNQLLSLYQNSNSESNYNLTEALMFLSHFIGDVHQPLHVGFLGDLGGNTIQVHWYRRKSNLHHVWDNMIIESALKTFYSSDLA TMIRAIQNNITENWSNQQPLWEHCAHNHTVCPNPYASESISLACKFAYKNASPGSTLEDDYFLSRLPVVEKRLAQGGIRLAATLNRIFASYVKIAQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21585		ENDO4	endonuclease 4 (.1)		Potri.011G044400 [exp]	0	1
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Potri.010G076100 [exp]	7.07	0.5848
AT5G50090			unknown protein		Potri.008G186700 [exp]	240.48	0.4684
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.002G004000 [exp]	244.33	0.4843	Pt-HMG1.3

Compare expression of checked genes

Potri.011G044400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.