Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BFN1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11190 440 / 6e-157 ENDO1, BFN1 ENDONUCLEASE 1, bifunctional nuclease i (.1) AT4G21585 312 / 2e-106 ENDO4 endonuclease 4 (.1) AT1G68290 311 / 3e-106 ENDO2 ,ENDO 2 endonuclease 2 (.1) AT4G21590 285 / 9e-96 ENDO3 endonuclease 3 (.1.2) AT4G21600 272 / 1e-90 ENDO5 endonuclease 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044400 [exp] 303 / 4e-103 AT4G21585 448 / 3e-160 endonuclease 4 (.1) Potri.010G123500 [exp] 290 / 6e-98 AT1G68290 412 / 1e-146 endonuclease 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018452 [exp] 505 / 0 AT1G11190 440 / 3e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1) Lus10011232 [exp] 510 / 2e-180 AT1G11190 441 / 6e-153 ENDONUCLEASE 1, bifunctional nuclease i (.1) Lus10018451 [exp] 296 / 5e-100 AT4G21585 408 / 2e-144 endonuclease 4 (.1) Lus10034336 [exp] 291 / 1e-98 AT1G68290 391 / 5e-138 endonuclease 2 (.1) Lus10041437 [exp] 254 / 2e-84 AT1G68290 327 / 2e-113 endonuclease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0368 [poplar] [flax] PhosC-NucP1 PF02265 [poplar] [flax] S1-P1_nuclease S1/P1 Nuclease
Representative CDS sequence Show only first row Show all	>Potri.011G044500.1 pacid=42781633 polypeptide=Potri.011G044500.1.p locus=Potri.011G044500 ID=Potri.011G044500.1.v4.1 annot-version=v4.1 ATGGATAGGATTAGAGGTTTGCTGAGATTGTGTGCTCTTGCATTTATATTTTTTGCGGGTTTAGCTTCCATTTCATTGCCAGGAGCTCTGGGATGGAGCA AGGAGGGTCATATAATAACTTGTCGGATTGCACAGAATCTTTTAGGGCCTGAGGCAGCACATGCTGTAGAAAACTTGTTGCCCCACAACCTCAATGGCGA CTTATCGGCACTCTGCATATGGCCTGACCAAATCCGTCATTGGTATAGATACAGGTGGACTAGCCCACTTCACTTCATTGACACACCAGACAAAGCCTGC ACATTTGATTATTCGAGGGATTGTGTGAAAGATGCTTGTGTTGATGGTGCCATCCAAAATTTTACCTCTCAGCTTTTGCACTATAGGGACGGCACTGCAG ATCGTCGATATAATTTGACAGAAGCCTTGTTATTCTTGTCCCACTTCATGGGAGATATTCATCAGCCAATGCATGTTGGATTCACTAGTGATGAAGGAGG AAACACCGTTGAACTGCGATGGTTCAGGCACAAATCTAATCTTCACCATGTATGGGACAGGGAGATTATTCTTACAGCTCTAAAAGATTTCTATGACAAT GACATGGTTCTCTTGCAAGAAGCCATAGAGGGGAACTTCACTGATGGAATATGGTTTGACGATGTAGCATCATGGAAAGATTGTGATGATCTCCTTTCAT GTCCAGACAAGTATGCCACAGAGAGCATAAACATGGCTTGCAAATGGGGTTACAAAGGCGTCAAGGAAGGTGTAACTCTAGCAGATGATTACTTCGATTC GAGGATGCCAATTGTCATGAAACGCATTGCTCAAGGTGGAGTTCGTTTAGCCATGTTCTTGAATCGGATTTTTGGGGATCCCGAAGAAGGGTTTGCATCA CCAACATAA
AA sequence Show only first row Show all	>Potri.011G044500.1 pacid=42781633 polypeptide=Potri.011G044500.1.p locus=Potri.011G044500 ID=Potri.011G044500.1.v4.1 annot-version=v4.1 MDRIRGLLRLCALAFIFFAGLASISLPGALGWSKEGHIITCRIAQNLLGPEAAHAVENLLPHNLNGDLSALCIWPDQIRHWYRYRWTSPLHFIDTPDKAC TFDYSRDCVKDACVDGAIQNFTSQLLHYRDGTADRRYNLTEALLFLSHFMGDIHQPMHVGFTSDEGGNTVELRWFRHKSNLHHVWDREIILTALKDFYDN DMVLLQEAIEGNFTDGIWFDDVASWKDCDDLLSCPDKYATESINMACKWGYKGVKEGVTLADDYFDSRMPIVMKRIAQGGVRLAMFLNRIFGDPEEGFAS PT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Potri.011G044500 [exp]	0	1	BFN1.1
AT4G18425			Protein of unknown function (D...		Potri.011G058000 [exp]	1.00	0.9012
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Potri.004G215400 [exp]	2.44	0.8483
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.008G038200 [exp]	2.82	0.8738	Pt-PAL.2,PAL2
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.006G018000 [exp]	4.58	0.8672
AT3G13650			Disease resistance-responsive ...		Potri.001G023800 [exp]	4.89	0.8473
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059800 [exp]	6.63	0.8109	RALFL32.1
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Potri.001G409900 [exp]	7.34	0.8412	PLIN-GEN.26
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.008G034800 [exp]	10.24	0.8543
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.013G053400 [exp]	12.00	0.7897	SIP1.3
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Potri.003G117000 [exp]	13.85	0.8153	Pt-PAK.1

Compare expression of checked genes

Potri.011G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.