Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07180 680 / 0 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT2G29990 677 / 0 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT4G28220 238 / 5e-71 NDB1 NAD(P)H dehydrogenase B1 (.1) AT4G21490 226 / 2e-66 NDB3 NAD(P)H dehydrogenase B3 (.1) AT4G05020 225 / 3e-66 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT2G20800 204 / 3e-58 NDB4 NAD(P)H dehydrogenase B4 (.1) AT5G08740 84 / 4e-17 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G27820 46 / 5e-05 ATMDAR4 monodehydroascorbate reductase 4 (.1) AT3G09940 46 / 5e-05 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G036300 [exp] 1028 / 0 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.009G047100 [exp] 699 / 0 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.013G147300 [exp] 223 / 2e-65 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.011G042500 [exp] 221 / 1e-64 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.004G034100 [exp] 219 / 7e-64 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.013G147200 [exp] 213 / 6e-62 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.013G147400 [exp] 212 / 2e-61 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.007G098700 [exp] 73 / 2e-13 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1) Potri.001G346200 [exp] 49 / 7e-06 AT3G27820 723 / 0.0 monodehydroascorbate reductase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006731 [exp] 835 / 0 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10020091 [exp] 835 / 0 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10038322 [exp] 675 / 0 AT1G07180 746 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10040657 [exp] 674 / 0 AT1G07180 750 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10036185 [exp] 670 / 0 AT1G07180 742 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018248 [exp] 293 / 9e-96 AT1G07180 328 / 3e-110 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10039769 [exp] 274 / 5e-85 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018249 [exp] 233 / 1e-72 AT2G29990 274 / 3e-89 alternative NAD(P)H dehydrogenase 2 (.1) Lus10018541 [exp] 240 / 1e-71 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10006737 [exp] 227 / 7e-67 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.011G044600.3 pacid=42780386 polypeptide=Potri.011G044600.3.p locus=Potri.011G044600 ID=Potri.011G044600.3.v4.1 annot-version=v4.1 ATGGCATTTGCAAGGGTTGCTAGAAGTGGCTTGAGAAGAACAGGAGGTACCTTTGGCAGTTACTCAAGTGAAGGGGATGTGTTATTATGTGAAGGAGTAT CTATCCATAGAGGTCCCTTACCTTCCCTTAAAAATGCCAAAGCTGCCAGTGATTTTTCGTACATTTCCAGCTTCAGGAAGATTAATCACGTGAATATGCA GAGCAGGGGAATCAGGGTAACTCCACGGTATCAATCTGCAACTGCAGAGAGGATTGTGGAGGAGTCAGAATCCGAATATGATGAACCAAGGTATCCAGGG CTTGAAGCAACAAAGCCTGGTGAAAAGCCAAGGGTAGTTGTCCTTGGTACTGGATGGGCTGCTTGTCGATTCATGAAAGGACTTGACACCAAAATTTATG ACATTGTTTGCGTATCTCCAAGGAATCACATGGTGTTCACACCTTTGCTGGCTTCAACTTGTGTTGGAACACTTGAGTTTCGCTCTGTGGTTGAGCCTGT TAATCGGATACAATCCGCGTTGGCAACAAGTCCCGACTCATACTTTTATATGGCTTCCTGTTTTGGCGTTGACACAGACAAGCATGAAGTGTACTGTGAG ACAATCAGCAATGGTGGACTGCCACATGAACCTTACCAGTTTAAAGTTGCATATGACAAGCTTGTCATTGCTGCTGGATCCGAGCCTCTGACTTTTGGTA TCAAAGGGGTAAAGGAACATGCGTTTTTTCTTAGAGAAGTAAATCACGCTCAAGAAATAAGGAAAAAGCTTCTCTTGAATCTTATGCTCTCTGAAAATCC AGGCATACCTGAAGAAGAAAAGAAACGGCTTTTACATTGTGTAGTTATTGGAGGTGGTCCTACTGGTGTGGAATTTAGTGGTGAATTGAGTGATTTTATC ATGAGAGATGTTCGGGACCGGTATACTCATGTTAAGGATTATGTTAAAGTCACCCTCATAGAGGCAAATGAGATCCTGTCATCCTTTGATGTTAGCCTGC GGCAATATGCAACAAATCATTTGACCAAGTCTGGTGTCGGTTTTATGCGAGGAGTAGTGAAAGAGGTGCACCCCAAAAACATAGTTCTTAATGACGGGAC TAATGTTCCTTATGGTCTTTTGGTCTGGTCTACTGGTGTTGGTCCCTCTCAGTTTGTGAAGTCATTAGACCTTCCCAAGTCCCCTGGTGGAAGGATTGGT ATTGATGAATGGTTGCGAGTCCCGTCTGTAGAAGATGTGTTTGCACTTGGAGACTGTGCTGGTTTTCTTGAAAATTCAGGGAGACCAGTGCTTCCAGCTT TAGCTCAGGTTGCAGAAAGGCAAGGGAAATATCTTTTGGAGCTGTTTAACAAGATTGGAAAGCATGGAGGCAAGGCTTTAAGTGCAAAAGATATCCCTCT TGGTGATCCTTTTGTCTACCAGCATCTTGGAAGCATGGCATCAGTAGGTCGTTACAAGGCGCTAGTTGATCTACGCCAATCCAAGGATGCAAAAGGTTTA TCACATGCTGGATTTGTTAGCTGGTTGATTTGGCGCTCAGCTTACCTTACGCGTGTGGTCAGCTGGAGGAACCGGTTTTACGTGGCAGTGAACTGGGCAA CCACCCTGGTTTTTGGCAGAGACAATTCCAGGATAGGATAG
AA sequence Show only first row Show all	>Potri.011G044600.3 pacid=42780386 polypeptide=Potri.011G044600.3.p locus=Potri.011G044600 ID=Potri.011G044600.3.v4.1 annot-version=v4.1 MAFARVARSGLRRTGGTFGSYSSEGDVLLCEGVSIHRGPLPSLKNAKAASDFSYISSFRKINHVNMQSRGIRVTPRYQSATAERIVEESESEYDEPRYPG LEATKPGEKPRVVVLGTGWAACRFMKGLDTKIYDIVCVSPRNHMVFTPLLASTCVGTLEFRSVVEPVNRIQSALATSPDSYFYMASCFGVDTDKHEVYCE TISNGGLPHEPYQFKVAYDKLVIAAGSEPLTFGIKGVKEHAFFLREVNHAQEIRKKLLLNLMLSENPGIPEEEKKRLLHCVVIGGGPTGVEFSGELSDFI MRDVRDRYTHVKDYVKVTLIEANEILSSFDVSLRQYATNHLTKSGVGFMRGVVKEVHPKNIVLNDGTNVPYGLLVWSTGVGPSQFVKSLDLPKSPGGRIG IDEWLRVPSVEDVFALGDCAGFLENSGRPVLPALAQVAERQGKYLLELFNKIGKHGGKALSAKDIPLGDPFVYQHLGSMASVGRYKALVDLRQSKDAKGL SHAGFVSWLIWRSAYLTRVVSWRNRFYVAVNWATTLVFGRDNSRIG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Potri.011G044600 [exp]	0	1
					Potri.008G174050 [exp]	15.19	0.7660
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G102700 [exp]	16.97	0.7332
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Potri.005G082100 [exp]	23.64	0.6884
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.004G179300 [exp]	23.83	0.7625	Pt-ZOG1.14
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134300 [exp]	28.72	0.7610
AT2G19080			metaxin-related (.1)		Potri.001G065336 [exp]	39.49	0.7289
AT4G30810		SCPL29	serine carboxypeptidase-like 2...		Potri.018G103100 [exp]	92.36	0.6418
					Potri.010G175801 [exp]	110.19	0.6264
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.002G094800 [exp]	110.55	0.6904
AT1G58170			Disease resistance-responsive ...		Potri.016G061000 [exp]	144.92	0.5974

Compare expression of checked genes

Potri.011G044600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.