Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61210 723 / 0 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 667 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 510 / 8e-167 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 501 / 1e-163 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G15900 115 / 8e-27 PRL1 pleiotropic regulatory locus 1 (.1) AT3G49660 111 / 1e-26 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 110 / 9e-25 TAF5 TBP-associated factor 5 (.1) AT1G62020 105 / 1e-22 Coatomer, alpha subunit (.1) AT2G21390 104 / 2e-22 Coatomer, alpha subunit (.1) AT3G16650 101 / 3e-22 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G002300 [exp] 553 / 0 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 514 / 2e-169 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 120 / 1e-27 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.010G012800 [exp] 117 / 3e-27 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.018G020200 [exp] 117 / 7e-27 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 108 / 1e-25 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 105 / 3e-24 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 100 / 1e-22 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 100 / 5e-22 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011224 [exp] 862 / 0 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 855 / 0 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 509 / 2e-168 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 494 / 1e-152 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041006 [exp] 153 / 8e-43 AT1G11160 168 / 5e-49 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 116 / 2e-26 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10039636 [exp] 110 / 5e-26 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 108 / 2e-24 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 108 / 2e-24 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10007449 [exp] 108 / 6e-24 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF13925 [poplar] [flax] Katanin_con80 con80 domain of Katanin
Representative CDS sequence Show only first row Show all	>Potri.011G045500.1 pacid=42780738 polypeptide=Potri.011G045500.1.p locus=Potri.011G045500 ID=Potri.011G045500.1.v4.1 annot-version=v4.1 ATGGCGAAGCGTGGATATAAGCTGCAAGAATTTGTGGCTCATTCTACCAATGTGAACTGCTTAAGTATCGGTAAAAAGGCGTGTAGAATGTTTATCACCG GTGGTGATGATCATAAAGTGAATCTTTGGGCAATTGGCAAACCCACTTCTTTAATGAGCTTGTGTGGTCATACAAGTCCAGTTGAATCTGTTGCTTTTGA TACATCAGAAGTTTTAGTGCTTGCCGGAGCTTCTATGGGTGCAATAAAGCTGTGGGATTTAGAAGAAGCTAAGATGGTTCGCACTCTTACTGGACACAGA TCCAACTGCACTGCTGTTGAATTCCATCCATTTGGTGAGTTCTTTGCTTCTGGTTCCACAGACATGAATATGAGGATCTGGGATATCAGAAAAAAGGGCT GCATACACACTTACAAGGGTCATACTCAAGGAATTAGCACTATCAGATTTTCTCCCGATGGTCGTTGGGTGGTTTCCGGTGGATGTGATAATGTTGTAAA GGTGTGGGATCTTACTGCTGGAAAGCTTTTACATGATTTTAAGTTCCATGAAGGACATATTAGATCCATTGATTTCCATCCCCTTGAGTTTCTCCTTGCT ACTGGTTCAGCAGACAGAACCGTGAAATTCTGGGATTTGGAGACCTTCGAACTGATTGGATCTGCCCGACCTGAGGCTACAGGAGTGCGCTCTATTACCT TTCATCCTGATGGAAGGACACTTTTTTGTGGATTAGATGATAGTCTGAAGGTTTATTCTTGGGAGCCTGTGATTTGCCATGATGCTGTTGATATGGGATG GTCAACACTTGGTGACCTCTGCATTCATGATGGGAAACTCTTGGGCTGTTCATTCTATAGAAACTCTGTTGGAGTTTGGGTTGGAGATATATCGTGCATT GAGCCATATGGTGATGGTTTTGTACCCAAAGAAAGTGAATGCACAGACCAGAAATTTAACATCCCTGGATGTAATTCTTCAGATAAAGTAGGAAGTGATG TGAGATCAACTTTGGGTTTCCGTTCTCCATCTCCTGACTACGAGACAAAGGAAATAAAGAACATATATGTAGACTCTACTGGTGGAAATCCTGTTACTTT ACAAAGAGCTGGTTCCCTGAATTCATCAAAAGAAGTCCTCTCACTGGATTCCAAGGAAATGAGTGCTCCTCTAACCGAGAAGCAGAGCCCTTTAATGGGA ATGAATGCAAATTTGAGTGAACAAACTTTTAACAAATCTTTCATTGTCCCTACCATTGTACCTCGGGACATTCCTGTTGAAAAAGATTCTTCTAATTCTG GAAAGGAAACTATCAAGTTTACAAAAACCAAACCTGGTATGTTGCTCAGACCAGCTCATGTGCGGAGGCCATCAAATAGCAAGAATGATGTTGACAAGAT GTCAGTGGCTCTTGAATCTGGAAATTTTAGCAGTGTTACAAGTGAGAAAGGAAGTGCAAGAGATCCCAGCTTGCAATCCCAGATTGTAACAGAAGATGGA GCTCAAAAATCCCATGAGAAGAAAAGCCCCAGTATCAAGGGTGTCACAGAGAAGTTTGAAAAAGTTTTATCACCAGAAACACCTAATCAGGGAAACTGTG ACGAATCTGTTAAAAGCAGTAAAGAGATTGCCCCTGTTAAGATTGTCAATGGAGTTGCAGTGGTATCGGGCAGGACACGTAGTCTTGTTGAGAGGTTTGA AAGAAGGGAGAAATTAAGCAGCGAAGATCAAGAATTAAACACAAGTCATCAAGCTGTGCCAGAATCAAACAGGACCTCCACCACAGAAACAAATCCGACC CCTCCTGTCATTTCTGGAACAGATAGAACACCTGTTACATCAAATATGACTCCTCTCATTGTGCCTGAAACAGACAGAACTGCCACAATAGCACCTAAAA TGAACCCTTGTTTTGTACCTGAAACAGATAATACAGCCTCCGCAGCATCAAAAATGATTTCTATTGCCATACCTGAGAAGGATAGAACAGCCACCATAGC AACTAAATCAAGCCCTCGTGTTATACCTGAAACAGATAGAAAACCCTCTATATCAACTAATATGATGTCACGTGTTATATCGCAAACAGATAGAACACCC CCTGTAGCAGCCCGTATGACCTCTCGTGTTATGCCTGCAACTGATCGGACCCCCCCAGTAGCAACTATTTTCACCCCTCGTGTTGTACATGAAAGGGACA GAACACCCCCTATTCCTACAAACACTGCCATGCGAACTCCCCCAGTAGCAGCTGTTATCACCCCTCGTGTTATTCCTGAAAGGAATAGAACACCCCCTGT TCCTACTAATACAACCACGCCTGTTATACCTGCAGTGGATAGAATACCTTCCATAACTACTAATTTTACCCCTCGCATCGAATGTGAAATGGATAGAGCA CCCCTCAATCTGAATGAAGAGCCTCAAATTTCTGGTAGGGACTCGACTTCTGCTAATTATAAGGATGTTATTGAAGATCTGATGCAAAGTCACGATGTAT TCCTAAATACCCTTAAATCCCGCTTGACAAAGCTACAGGTGATTCGACATTTTTGGGAACGAAGTGACATTAAAGGTGCTATCAATGCCTTGAGGAAACT GCCAGATTATTCTGTGCAAGCAGATGTGATCAGTGTTCTCATGGACAAAATGGAGATTCTCAATTTAGATTTATTTTCTTGCTTGCTTCCTGTGCTTGTG GGCTTGCTAGACAGCAAGATGGAAAGGCATGCAAATATCTCATTGGAGATGCTACTGAAGCTTGTAGCGGTTTTTGGCCCTGTAATACAATCAGCTGTTT CCGCACCTCCAGTTGTTGGTGTTGATCTTCATGCAGAGCAAAGGCGAGAATGCTGCAACAAGTGCTTTGCTCAGCTGCAAAAGATCCAGCAAATTCTTCC AGCACTAGCAAGGAGGGGCGGTTTATTGACAAAAAGTGCTCTGGAATTGAATCTAGTCCTTCAACAGTCATAG
AA sequence Show only first row Show all	>Potri.011G045500.1 pacid=42780738 polypeptide=Potri.011G045500.1.p locus=Potri.011G045500 ID=Potri.011G045500.1.v4.1 annot-version=v4.1 MAKRGYKLQEFVAHSTNVNCLSIGKKACRMFITGGDDHKVNLWAIGKPTSLMSLCGHTSPVESVAFDTSEVLVLAGASMGAIKLWDLEEAKMVRTLTGHR SNCTAVEFHPFGEFFASGSTDMNMRIWDIRKKGCIHTYKGHTQGISTIRFSPDGRWVVSGGCDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLA TGSADRTVKFWDLETFELIGSARPEATGVRSITFHPDGRTLFCGLDDSLKVYSWEPVICHDAVDMGWSTLGDLCIHDGKLLGCSFYRNSVGVWVGDISCI EPYGDGFVPKESECTDQKFNIPGCNSSDKVGSDVRSTLGFRSPSPDYETKEIKNIYVDSTGGNPVTLQRAGSLNSSKEVLSLDSKEMSAPLTEKQSPLMG MNANLSEQTFNKSFIVPTIVPRDIPVEKDSSNSGKETIKFTKTKPGMLLRPAHVRRPSNSKNDVDKMSVALESGNFSSVTSEKGSARDPSLQSQIVTEDG AQKSHEKKSPSIKGVTEKFEKVLSPETPNQGNCDESVKSSKEIAPVKIVNGVAVVSGRTRSLVERFERREKLSSEDQELNTSHQAVPESNRTSTTETNPT PPVISGTDRTPVTSNMTPLIVPETDRTATIAPKMNPCFVPETDNTASAASKMISIAIPEKDRTATIATKSSPRVIPETDRKPSISTNMMSRVISQTDRTP PVAARMTSRVMPATDRTPPVATIFTPRVVHERDRTPPIPTNTAMRTPPVAAVITPRVIPERNRTPPVPTNTTTPVIPAVDRIPSITTNFTPRIECEMDRA PLNLNEEPQISGRDSTSANYKDVIEDLMQSHDVFLNTLKSRLTKLQVIRHFWERSDIKGAINALRKLPDYSVQADVISVLMDKMEILNLDLFSCLLPVLV GLLDSKMERHANISLEMLLKLVAVFGPVIQSAVSAPPVVGVDLHAEQRRECCNKCFAQLQKIQQILPALARRGGLLTKSALELNLVLQQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61210		DWA3	DWD hypersensitive to ABA 3, T...		Potri.011G045500 [exp]	0	1
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.018G124000 [exp]	3.74	0.6233
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	4.24	0.6736
AT5G42470			unknown protein		Potri.005G240000 [exp]	10.58	0.6404
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.009G026200 [exp]	21.21	0.6514
AT4G02740			F-box/RNI-like superfamily pro...		Potri.005G210500 [exp]	23.62	0.6376
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	24.81	0.6623
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Potri.005G099800 [exp]	27.49	0.6509
					Potri.018G105401 [exp]	27.74	0.6295
AT1G35220			unknown protein		Potri.002G100800 [exp]	27.83	0.6065
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.014G194300 [exp]	29.66	0.5882

Compare expression of checked genes

Potri.011G045500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.