Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03390 618 / 0 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 581 / 0 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 374 / 3e-118 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT4G22130 342 / 9e-109 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G53730 308 / 5e-94 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 306 / 7e-94 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G78980 278 / 7e-83 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 249 / 2e-72 SRF4 STRUBBELIG-receptor family 4 (.1) AT5G06820 243 / 6e-70 SRF2 STRUBBELIG-receptor family 2 (.1) AT2G30740 216 / 1e-63 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037000 [exp] 1085 / 0 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.019G103900 [exp] 652 / 0 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 623 / 0 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G010500 [exp] 333 / 2e-103 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.004G005301 [exp] 332 / 3e-103 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.001G161600 [exp] 312 / 1e-95 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 310 / 1e-94 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.007G002600 [exp] 286 / 3e-86 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.014G001200 [exp] 280 / 2e-83 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031628 [exp] 642 / 0 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10039795 [exp] 614 / 0 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 600 / 0 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10011223 [exp] 404 / 7e-131 AT4G03390 591 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018459 [exp] 397 / 3e-128 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018563 [exp] 397 / 4e-128 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10015549 [exp] 340 / 5e-104 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 320 / 1e-98 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10003926 [exp] 308 / 5e-94 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 307 / 5e-94 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G045600.9 pacid=42780627 polypeptide=Potri.011G045600.9.p locus=Potri.011G045600 ID=Potri.011G045600.9.v4.1 annot-version=v4.1 ATGGGGTTTGTCAAGTGTGGGGTGTTTTTTGTCTCGGTGGCGGTTCTCATGGCTTCCTTTTCTGTTTCTTACACTGACCCTAATGATGTGACTGCAATGA ATAGCTTGTTTGTTAGCTTGCAATATCCGCAGTTGATTGGTTGGGTTGCTATGGGAGGAGACCCATGTTCAGATGCATGGCAAGGAGTTGGTTGTGTATT CTCAAACATAACCTCATTAACACTAAATGGCTTGAATTTAGGGGGAACCTTGAACAACGATTTCAATAAATTTACATCAATCATAGATATAGATGTTAGT GATAATCATATTGGAGGGGATATTCCATCGGCGTTACCCTCTACCTTGAGGAACTTTTCTCTTGCTCGCAATCAGTTCACTGGAAGAATTCCAGATACTT TAAACTCATTAGGTCAACTGTTAGACTTATCTTTCCACAATAATCAGCTAATTGGAGGAATACCAGATGTCTTTCAACAAATGACAAGTTTGTCAAATTT GGATCTGTCTGGTAATAATTTGAGTGATCAGCTGCCTCCTTCAATGGGAACTTTGTCTTCTCTCAGCACATTGCATTTGCAGAACAATAGACTTACTGGG ACCCTTAATGTCCTGCAGGATCTTCCCCTCGAGTATCTGAATGTGGAGAACAATCTATTTTCTGGGCCTATTCCGGAGAAGCTGCTGGATATTCCAAATT TCAGAAAAGATGGAAATCCCTTCAATACATCTATCATTCCTTCTCCACCACCTGCCATCTCTCCATTTCCAAGCTTGCCACCTGTTGCAGAAGCACCTCA GAAGCAGGCAAATGGTCCTTCTGCCTCAGTAACACTAAAGTCTGGAAGATCAAAAGGATTTTTTGCATCTAAGAGGGTCATTTGGATTGCTGTTATAGGG GTAGTTGTTATTATTATCATACTGGGATTATGTCTTTTAATGTCAACATGCTGCAAAGGAAGGAAAGCAAATGAAGAAGACAATGAGAGGCACAATGTTA GTGTATATAAGAGCCATATAGATGAGCCCATCAGTAAATCTTCATTTGAACGAAACAATCAAGAGAAAGTTACCAAAGAATCAACCGTAAAGCTGCAAGA TCAATATGGACAAGAAGCCAGAAGGCAGGAAGCATATCCAAAGGCACAGGGTGAACAGGATATTGATTTGAAGAGAATGGCTGCATATTCAAAGCAAAAG ATGGATCATGGGATAAACATGACAAGCATGGATGCAAATTTTATGCCACTGCAGCCGCTGCCCCCACCTCCCCCAAGCCTTCCTATTGGCAATGTCATTG CAAATCCAATTGGGCATGCAGCTCATGAAAAGAGTCATTCAACCGGGACTCTGAGCTCACATTTTCCAAGGATTTTCACCATTGCTACACTTCAGCAGTA CTCAAACAGCTTTTCAGAAGAAAATTTTGTTGGTGAAGGGACACTTGGCAGTGTTTACAGGGCTGAGCTTCCTAGTGGAAAACTACTGGCAGTCAAGAAG CTAAACAGTGGAGCTTCCAAGCAACAGACTGATGAGGAATTTCTTCAACTAGTTTCTAGCATATCGAAAACTCAACATGATAATATCGTGGAGTTTGTGG GATACTGTAATGAGCATGGGCAACGGTTACTTGTTTATGAGTATTGCAAAAATGGGACATTGTATGATGCATTGCATGCGGATGATGAAATCCATAGGAA ATTCTCATGGAATGCACGTGTCCGGCTGGCACTAGGAGCTGCTAGAGCCCTCCAGTATCTGCATGAGGTTTGTCAACCACCTATTGTGCACTGGAATTTT AAATCTTCCAACATTCTCCTTGATGATAAGCTAGTAGCTCGTGTCTCAGACTGTGGCCTGGCTCCTCTGAAATCATCTGGCTTTGCAACTGAGTTATCAG GGCGCGTCCTCAGTGCTCATGGTTATGGGGCTCCAGAGCTTGAGTTGGGAAGTTATACTAGCAAGAGTGATGTATATAGCTTTGGAGTTGTGATGCTAGA GCTCCTCACCGGTAGAAAATCTTATGACAGGTCATTGAGTCGAGGGGAGCAATCTCTGGTTAGATGGGCAATTCATCAGCTTCATGATATAGATGCACTT TCTAGGATGGTTGACCCCTCTATAAAGGGGGCATGTCCTGTGAAGTCTTTATCACGTTTTGCTGATATAATATCTAGATGTGTGCAGTGGGAGCCCGAAT TCAGGCCACTTATGTCTGAAATCGTTCAGGATCTTTTATGTATGTTATAG
AA sequence Show only first row Show all	>Potri.011G045600.9 pacid=42780627 polypeptide=Potri.011G045600.9.p locus=Potri.011G045600 ID=Potri.011G045600.9.v4.1 annot-version=v4.1 MGFVKCGVFFVSVAVLMASFSVSYTDPNDVTAMNSLFVSLQYPQLIGWVAMGGDPCSDAWQGVGCVFSNITSLTLNGLNLGGTLNNDFNKFTSIIDIDVS DNHIGGDIPSALPSTLRNFSLARNQFTGRIPDTLNSLGQLLDLSFHNNQLIGGIPDVFQQMTSLSNLDLSGNNLSDQLPPSMGTLSSLSTLHLQNNRLTG TLNVLQDLPLEYLNVENNLFSGPIPEKLLDIPNFRKDGNPFNTSIIPSPPPAISPFPSLPPVAEAPQKQANGPSASVTLKSGRSKGFFASKRVIWIAVIG VVVIIIILGLCLLMSTCCKGRKANEEDNERHNVSVYKSHIDEPISKSSFERNNQEKVTKESTVKLQDQYGQEARRQEAYPKAQGEQDIDLKRMAAYSKQK MDHGINMTSMDANFMPLQPLPPPPPSLPIGNVIANPIGHAAHEKSHSTGTLSSHFPRIFTIATLQQYSNSFSEENFVGEGTLGSVYRAELPSGKLLAVKK LNSGASKQQTDEEFLQLVSSISKTQHDNIVEFVGYCNEHGQRLLVYEYCKNGTLYDALHADDEIHRKFSWNARVRLALGAARALQYLHEVCQPPIVHWNF KSSNILLDDKLVARVSDCGLAPLKSSGFATELSGRVLSAHGYGAPELELGSYTSKSDVYSFGVVMLELLTGRKSYDRSLSRGEQSLVRWAIHQLHDIDAL SRMVDPSIKGACPVKSLSRFADIISRCVQWEPEFRPLMSEIVQDLLCML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.011G045600 [exp]	0	1
AT3G20260			Protein of unknown function (D...		Potri.008G004400 [exp]	4.58	0.8113
AT5G28150			Plant protein of unknown funct...		Potri.013G038000 [exp]	7.14	0.7669
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.001G357700 [exp]	8.83	0.7438
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.001G283000 [exp]	9.16	0.7362
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.012G054200 [exp]	12.16	0.6834
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.015G033000 [exp]	12.84	0.7373
AT5G45030			Trypsin family protein (.1.2)		Potri.011G143200 [exp]	13.07	0.7223
AT5G57100			Nucleotide/sugar transporter f...		Potri.006G072500 [exp]	16.24	0.7088
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	16.49	0.6847
AT4G16650			O-fucosyltransferase family pr...		Potri.003G077500 [exp]	16.49	0.7398

Compare expression of checked genes

Potri.011G045600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.