Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11120 133 / 3e-40 unknown protein AT1G58007 78 / 4e-19 unknown protein AT1G09812 73 / 4e-17 unknown protein AT4G28170 69 / 2e-15 unknown protein AT5G65660 44 / 5e-06 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037200 [exp] 243 / 6e-84 AT1G11120 147 / 9e-46 unknown protein Potri.019G103800 [exp] 146 / 1e-45 AT1G11120 119 / 5e-35 unknown protein Potri.004G224200 [exp] 102 / 2e-28 AT1G09812 118 / 4e-35 unknown protein Potri.003G006900 [exp] 96 / 6e-26 AT1G09812 105 / 6e-30 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039796 [exp] 135 / 3e-41 AT1G11120 122 / 3e-36 unknown protein Lus10018462 [exp] 126 / 8e-38 AT1G11120 122 / 3e-36 unknown protein Lus10011221 [exp] 123 / 1e-36 AT1G11120 121 / 8e-36 unknown protein Lus10018564 [exp] 89 / 2e-23 AT1G11120 74 / 1e-17 unknown protein Lus10037361 [exp] 64 / 6e-13 AT1G09812 97 / 2e-26 unknown protein Lus10035787 [exp] 59 / 4e-11 AT1G09812 96 / 8e-26 unknown protein Lus10002158 [exp] 47 / 3e-07 AT5G65660 146 / 3e-46 hydroxyproline-rich glycoprotein family protein (.1) Lus10039633 [exp] 47 / 5e-07 AT5G65660 147 / 1e-46 hydroxyproline-rich glycoprotein family protein (.1) Lus10020107 [exp] 39 / 0.0005 AT4G31730 122 / 1e-35 glutamine dumper 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G045900.2 pacid=42781890 polypeptide=Potri.011G045900.2.p locus=Potri.011G045900 ID=Potri.011G045900.2.v4.1 annot-version=v4.1 ATGGTTGCTTATGATGGTGGCTATAATGTTTGGCCACCAACAGAATCTCCATTGTTAAATGCGCAAAGAGAGGATCAACTCTGGAGACATTTTGACAATT CAGTTAATGCTGTGTCTTTTGGGTTTGTAGCTACTGCCATTCTCATTTCAATGTTCTTGGTTATGGCCATCTTTGAAAGGTTTCTTGGACCCACTTCAGG TAGAGGTGGCCATGGTGATCTTGAGTCTCAAACGAGGTTCAATTCTAAGCTTGGACACCCTTCACCAAAAATGACTGTATATGCAAATGGAGTTTCTGTG TTGATGCCTGGAGATAACATTCCCACCTTCATAGCACTTCCAGCACCAGTGCCTTGTCCTCCCGAACGCCCCTCCTACCCTCACAATCAACAACATATCA ATCAATTACCGAATCCCACTGCCAGCCCTGACACAAACTCAAGCTCGAGTTCGATCTCAACACAACAAAACTAG
AA sequence Show only first row Show all	>Potri.011G045900.2 pacid=42781890 polypeptide=Potri.011G045900.2.p locus=Potri.011G045900 ID=Potri.011G045900.2.v4.1 annot-version=v4.1 MVAYDGGYNVWPPTESPLLNAQREDQLWRHFDNSVNAVSFGFVATAILISMFLVMAIFERFLGPTSGRGGHGDLESQTRFNSKLGHPSPKMTVYANGVSV LMPGDNIPTFIALPAPVPCPPERPSYPHNQQHINQLPNPTASPDTNSSSSSISTQQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11120			unknown protein		Potri.011G045900 [exp]	0	1
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144200 [exp]	5.38	0.8305
AT3G10760	GARP		Homeodomain-like superfamily p...		Potri.006G034900 [exp]	10.53	0.8224
AT1G10690			unknown protein		Potri.010G045200 [exp]	12.80	0.8253
AT5G65550			UDP-Glycosyltransferase superf...		Potri.010G182650 [exp]	13.67	0.7984
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.014G006900 [exp]	14.83	0.8212	Pt-PSK3.2
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.011G033300 [exp]	17.20	0.8125
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.004G046600 [exp]	18.43	0.8185
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Potri.014G022100 [exp]	19.44	0.8164
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.006G155200 [exp]	20.83	0.7819
AT5G10290			leucine-rich repeat transmembr...		Potri.007G094500 [exp]	29.44	0.7441

Compare expression of checked genes

Potri.011G045900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.