Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) AT4G09300 219 / 9e-72 LisH and RanBPM domains containing protein (.1) AT1G11110 211 / 3e-68 LisH and RanBPM domains containing protein (.1) AT1G06060 54 / 2e-08 LisH and RanBPM domains containing protein (.1) AT4G09340 52 / 1e-07 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT1G35470 51 / 2e-07 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT5G66810 41 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037600 [exp] 410 / 2e-147 AT1G61150 384 / 3e-137 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.002G029700 [exp] 66 / 6e-13 AT1G06060 283 / 1e-97 LisH and RanBPM domains containing protein (.1) Potri.005G233000 [exp] 64 / 3e-12 AT1G06060 201 / 3e-65 LisH and RanBPM domains containing protein (.1) Potri.019G080800 [exp] 59 / 9e-10 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 57 / 2e-09 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011219 [exp] 416 / 2e-149 AT1G61150 392 / 6e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10018464 [exp] 415 / 6e-149 AT1G61150 392 / 9e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10004152 [exp] 67 / 3e-13 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10005633 [exp] 66 / 8e-13 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10001544 [exp] 55 / 2e-08 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009451 [exp] 50 / 1e-06 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10008254 [exp] 41 / 0.0004 AT1G35470 309 / 3e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0561 [poplar] [flax] LisH PF08513 [poplar] [flax] LisH LisH CL0561 [poplar] [flax] PF10607 [poplar] [flax] CLTH CTLH/CRA C-terminal to LisH motif domain
Representative CDS sequence Show only first row Show all	>Potri.011G046200.8 pacid=42781729 polypeptide=Potri.011G046200.8.p locus=Potri.011G046200 ID=Potri.011G046200.8.v4.1 annot-version=v4.1 ATGATGTCACTGTTCTGGATTGTGATTCGTCAGCTTGCAGAAATTGAAGCAATGGCTACGTCGAAAAAGGTGATTACAAGAGAAGAGTGGGAAAAGAAGC TTAATGATGTAAAAATCAGGAAAGAAGACATGAATAAATTGGTGATGAACTTTCTTGTTACTGAAGGTTATGTTGATGCTGCTGAGAAATTCCAGATGGA ATCAGGAACTGAACCAGATATAGATCTTGCAACAATTACAGATCGAATGGCTGTTAAGAAGGCTGTGCAGTGTGGAAATGTTGAGGATGCTATTGAGAAA GTCAATGATTTAAATCCCGAGATACTGGACACAAATCCGCAACTGTTTTTCCATCTCCAGCAACAGAGATTTATAGAACTGATTCGGAATGGCAAGGTAG AAGAGGCTTTGGAGTTTGCTCAGGAGGAACTTGCACCAAGGGGAGAAGAAAACCAAAGCTTTTTAGAAGAACTGGAGAGGACTGTTGCACTGCTGGCTTT TGAAGATGTTTCTAACTGCCCTGTTGGAGGACTTTTGGATATTTCACAGCGCCTGAAGACAGCAAGTGAGGTGAATGCAGCTATCCTTACAAGCCAGAGT CGTGAAAAAGATCCAAAGCTTCCAAGCTTGTTAAAAATGTTGCTATGGGCTCAGAACCAACTTGATGAGAAAGCTGTTTATCCTCGAATAAACGATTTAT CCACTGCCATGCTTGAAGACCCTGCAGTTTGA
AA sequence Show only first row Show all	>Potri.011G046200.8 pacid=42781729 polypeptide=Potri.011G046200.8.p locus=Potri.011G046200 ID=Potri.011G046200.8.v4.1 annot-version=v4.1 MMSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFQMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK VNDLNPEILDTNPQLFFHLQQQRFIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGGLLDISQRLKTASEVNAAILTSQS REKDPKLPSLLKMLLWAQNQLDEKAVYPRINDLSTAMLEDPAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61150			LisH and RanBPM domains contai...		Potri.011G046200 [exp]	0	1
					Potri.002G120500 [exp]	2.23	0.8620
AT1G48160			signal recognition particle 19...		Potri.015G036700 [exp]	2.44	0.8790	Pt-SRP19.2
AT1G67350			unknown protein		Potri.003G173000 [exp]	3.46	0.8850
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.002G082700 [exp]	4.24	0.8728
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Potri.009G135500 [exp]	5.65	0.8548
AT2G40110			Yippee family putative zinc-bi...		Potri.010G190000 [exp]	9.53	0.8402
AT4G30010			unknown protein		Potri.018G142500 [exp]	9.59	0.8630
AT5G47890			NADH-ubiquinone oxidoreductase...		Potri.003G159100 [exp]	11.74	0.8217
AT3G61200			Thioesterase superfamily prote...		Potri.002G155500 [exp]	12.48	0.8180
AT2G28370			Uncharacterised protein family...		Potri.009G014600 [exp]	12.96	0.8406

Compare expression of checked genes

Potri.011G046200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.