Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61140 956 / 0 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G11100 883 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G50410 877 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 804 / 0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G16600 432 / 6e-136 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT5G22750 227 / 1e-60 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G05130 217 / 4e-58 DNA/RNA helicase protein (.1) AT5G43530 172 / 6e-43 Helicase protein with RING/U-box domain (.1) AT1G05120 148 / 4e-36 Helicase protein with RING/U-box domain (.1) AT1G02670 146 / 7e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037700 [exp] 2021 / 0 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.007G000700 [exp] 855 / 0 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.014G154600 [exp] 305 / 1e-87 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G189400 [exp] 227 / 1e-60 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 220 / 5e-59 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 202 / 3e-53 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 195 / 9e-51 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 191 / 2e-49 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.014G005701 [exp] 146 / 4e-41 AT1G50410 155 / 3e-45 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011211 [exp] 1053 / 0 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 851 / 0 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 798 / 0 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10018465 [exp] 606 / 0 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041156 [exp] 273 / 2e-75 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10030044 [exp] 249 / 1e-67 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10043365 [exp] 245 / 3e-66 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10039001 [exp] 232 / 7e-63 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10027296 [exp] 132 / 1e-32 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10019523 [exp] 120 / 4e-30 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G046400.1 pacid=42781492 polypeptide=Potri.011G046400.1.p locus=Potri.011G046400 ID=Potri.011G046400.1.v4.1 annot-version=v4.1 ATGGCGGGCGGGAGCACGAGGAGTATGATGCCAGGTGGTGAAATCGTGGCCGTTGGTGATGGAAATACTGGAGATGGAGAGGAGGAGGACTTGCCAATGG ATGTCGGCTTGTTTTATACTATTCTTGAAGAAGAACTACGTGCTTCTCCGAGTGGTAAAGGGGATATTTTGGTTGAGAATTTGCAGGCTGAGCCAGTGCC GGATACTGGAAATGGCGGAATCTGGCATTTACAAAGTGGGTCTCAGATGATAGAAGGGGCAGATGGAGGGGATGGATCTGTGGATTATGTCGCGAACTCT ATACACAACCCAGAAGGTTCAGATGCTAGTGTAGGTCATTTGGGTGGTTCTTTTGATTATGCAGGGAAACAAATGAGCTCTTCAATGCATGCTTACTCTG GAAGTAATAGAGAGTTTTGTTTACCGTTTCAAGAGGATCAAGGAACAATGAGGGATGGAGTGTTGAAATCAGAGATAGCCAGTTGCAGTACAGCATCTAC TACTTTTGCTGATGGAGTGTCTAGCTGTATTGCAGATCATGCACGTGGTTTGAATTTAAATCCTCTTTTGGATGAAAATGGAAACCAGTTGAGGCATGTG GAAGGGAACTTCAAATCCACAGATGCTGCACATGGTTCTTGGATGGACAGTTCGGATGAGAAGTTTGGATCTGGTGATGCATTCGTTAAGAATAGCTTAG AAATCCTAGAACCTGAAAATGACATTGATAGATCCATGGACATGCAGTTGATGAATACAGATGTTTTTTCACATGATATGATTTCTCCCAAGTCTGATGT CTGGCATTATCCTGATTTTCATACTGAATTCAGCAATAATCATTCAGCTATGCAATTTGGCATGAACGAATATGATACACATTATACTGATTCTCCACAA TGCGATTTTTCCAGTGCTTTTAATTTTGGATTATCGCACAACAATCAAGAAATTAATGATTTTCAACCTGAGAGTGCATGCTCTGGATCAGAGACTTCGA TGATGCCTTACTCTGATGTAAACATGATGAATGTTAAATATGAAGGTATCGACTATATGCCACCAATCAGTGGAAATTTTTCATCAAGTGCTGAAGATGG ACTTTTTAATGACAAGGCATCAGTTATGCAATCCAGTTATATTCAGTTAGGCATCAGTGGGGACCAAACAGTTCGTGTAGGCGATGAAAAAACTGATGGA TCGGCTGTGTGTAGGAACATGACATGGCAGTCTGGTGGAGTTACTGAAGCTCTCGACAGAAAGTGTTCCTGGAGTGATGGAAATGGTGCTTTTGTTGACG AAGACAAAAAACAGTCATCATCAGGTTTTTTATCGTCTGTGCAAAGTCAGAAGCATGTAATTTACACTAAGGATGAACGGGGGTGTGTGACCATTGGATC TTCAAGAGATCAAGTGGAGGGAGTTGTTGGTAGGTTTCCCTTGGACAGTGCATATTTGAATTTAAATGCTTCAGAGCAGTATTTTCCCGTTGCTCAGACA TTCAATATAAGCAACAAGCAGTTGAGTTGTGGTAAGGATGAAGAACTGGGTATACCGATTCAGTCTAAGGCCTTGGGTTCTCATCTTTCAATAGTCAGCC CTGAATCAATTGAGAGTAATTCGTCTGGAAGCAAATCCCATGTTGATGATGATCCTGATATATGTATTCTTGATGATATCAGTCAACCTGCTTACTCAAA CCAATCTTTTGCTTCTATAAAGTCCATAGTTCCTTTGCAACGACCTACATATAATGATTCACCTCATCATTCTGCAGTAGAAGGCACAAGGTTCAGGGCC AATGATGAGCGCCTTGTACTTCGAGTTGCACTGCAGGATCTTGCTCAACCAAATTCTGAAGCTGTTCCACCCGATGGTGTTTTGGCAGTTCCTCTCATGA GACATCAGCGAATTGCGTTGTCATGGATGGTTCAGAAGGAAACCTCTAGCTTGCACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGGCTGGGAAAAAC AGTATCAACCATTGCTCTTATACTCAAGGAAAGAGCTCCTTCTCATCGAGCGGATGCTGTGGCTGTTAAGAAAGAAGAGTGTGAAACCTTAAATTTGGAT GATGATGATGATGGAGTTACTGAGATTGACAGAATGAAGAAAGGTGCCGATGGTTCTCAAGTTACATCAAATCATAGTTCAACAAAGAGCCTGAACTCTT CTGGGCAATCCAAGGGAAGGCCAGCTGCTGGAACTCTCATTGTTTGCCCAACAAGTGTCCTGCGGCAGTGGGATGATGAATTGCGTAAGAAGGTAACCAC TGAAGCCAATCTCTCGGTTCTAGTATACCATGGAAGCAATCGAACAAAGGATCCTTCAGAGCTGGCAAAGTATGATGTTGTCATTACAACATATTCAATT GTCAGCATGGAGGTCCCAAGGCAGCCTCTGGCTGATGAAGATGATGAAGAGAAACGAAGAATGGAAGGCGATGATGCTCCGCGCCTAGGATTTTCATACA GTAAGAAAAGAAAAAATCCTCCTAGTTTTGGCAAAAAGGGTTCAAAGAATAAGAAAGGAATGGATAGTGCAATGCTTGAGTCCATTGCCCGGCCTCTTGC AAAGGTGGCATGGTTTAGGGTTGTCCTTGATGAAGCCCAGAGCATCAAGAATCACAGAACTCATGTGGCCAGGGCCTGTTGGGGTCTTCGGGCAAAACGC AGGTGGTGCTTGTCTGGTACCCCTATCCAAAATGCAATTGATGATCTCTATAGCTATTTCAGATTCCTCAGATATGACCCATATGCTGGCTACAAGCTAT TCTGCTCAGCAATAAAGGTCCCAATTCAAAAGAATGAACAAAAAGGGTACAAAAAATTACAAGCTGTTTTGAAGACAGTAATGCTTCGTCGCACCAAAGG CACTCTTCTTGACGGGGAACCAATTATTAACCTACCTCCCAGAGTAGTAGAACTAAAAAAAGTGGACTTTACAGAGGAAGAACGTGAATTCTACACCAGA CTAGAAATTGATTCACGAGCTCAGTTTAAAGAATATGCAGCTGCTGGAACTGTTAAACAAAATTATGTTAACATCTTGTTGATGCTGTTGCGTCTTCGAC AAGCTTGTGATCATCCTCGTCTCGTCTCGGGTTTAGATTCAAGTTCTCTAGGTAGTTCCTCAGTTGAGATGGCAAAGAAGCTTCCTCGGGAGAAACAATT ATGCCTTTTAAATTGTTTAGAAGCATCTTTGGCAAGCTGTGGCATATGCAGTGATCCACCTGAAGATGCTGTTGTTTCAGTATGTGGTCATGTATTCTGC AGACAGTGTGTCTTTGAGCATCTTACTGGTGATGATAGCCAATGCCCCATGTCAAACTGCAAAGTTCGACTGAATGTGTCTTCAGTGTTTTCCAAAGCTA CATTAAACAGTTCTCTATCTGATGAGCCTGGTCAGGATTGTTCTGATTCTGAGCTTGTTGCGGCAGTTAGCTCATCCTCTGACAACCGTCCCCATGATTC ATCAAAAATTAGGGTAGCTCTTGAAATCCTGCAATCGCTGACTAAGCCAAAAGATTGTTTGCCTACAGGCAATTTGTTAGAGAATTCTGTTGATGAAAAT GTTGCTTGTTATGATACCTCATCTGGTTCTAGAGATTCAGTTAAGGATGGAATGGATAAAAGATGCCTCCCAATTAAGGCTGTTGGGGAGAAAGCCATAG TTTTTTCCCAATGGACAGGAATGCTAGATTTGCTTGAAGCTTGTCTTAAAAATTCTTCCATTCAGTACAGAAGACTGGATGGAACAATGTCAGTTACTGC CCGAGATAAAGCTGTGAAGGATTTCAATACACTTCCGGAGGTATCTGTTATGATTATGTCTTTGAAAGCAGCTAGTCTTGGACTGAACATGGTTGCAGCT TGCCATGTGTTGCTTCTGGACCTATGGTGGAATCCTACAACTGAAGATCAGGCAATTGATAGGGCACATCGTATTGGACAAACTCGTGCAGTTACAGTTT TGCGATTAACTGTAAAAAATACTGTTGAAGATCGTATATTAGCCCTCCAGCAAAAGAAGAGAGAGATGGTGGCATCTGCTTTTGGAGAGGATGAAAATGG TGGACGTCAGACTCGCCTAACAGTGGATGACTTGAATTACCTATTTATGGTGTGA
AA sequence Show only first row Show all	>Potri.011G046400.1 pacid=42781492 polypeptide=Potri.011G046400.1.p locus=Potri.011G046400 ID=Potri.011G046400.1.v4.1 annot-version=v4.1 MAGGSTRSMMPGGEIVAVGDGNTGDGEEEDLPMDVGLFYTILEEELRASPSGKGDILVENLQAEPVPDTGNGGIWHLQSGSQMIEGADGGDGSVDYVANS IHNPEGSDASVGHLGGSFDYAGKQMSSSMHAYSGSNREFCLPFQEDQGTMRDGVLKSEIASCSTASTTFADGVSSCIADHARGLNLNPLLDENGNQLRHV EGNFKSTDAAHGSWMDSSDEKFGSGDAFVKNSLEILEPENDIDRSMDMQLMNTDVFSHDMISPKSDVWHYPDFHTEFSNNHSAMQFGMNEYDTHYTDSPQ CDFSSAFNFGLSHNNQEINDFQPESACSGSETSMMPYSDVNMMNVKYEGIDYMPPISGNFSSSAEDGLFNDKASVMQSSYIQLGISGDQTVRVGDEKTDG SAVCRNMTWQSGGVTEALDRKCSWSDGNGAFVDEDKKQSSSGFLSSVQSQKHVIYTKDERGCVTIGSSRDQVEGVVGRFPLDSAYLNLNASEQYFPVAQT FNISNKQLSCGKDEELGIPIQSKALGSHLSIVSPESIESNSSGSKSHVDDDPDICILDDISQPAYSNQSFASIKSIVPLQRPTYNDSPHHSAVEGTRFRA NDERLVLRVALQDLAQPNSEAVPPDGVLAVPLMRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTVSTIALILKERAPSHRADAVAVKKEECETLNLD DDDDGVTEIDRMKKGADGSQVTSNHSSTKSLNSSGQSKGRPAAGTLIVCPTSVLRQWDDELRKKVTTEANLSVLVYHGSNRTKDPSELAKYDVVITTYSI VSMEVPRQPLADEDDEEKRRMEGDDAPRLGFSYSKKRKNPPSFGKKGSKNKKGMDSAMLESIARPLAKVAWFRVVLDEAQSIKNHRTHVARACWGLRAKR RWCLSGTPIQNAIDDLYSYFRFLRYDPYAGYKLFCSAIKVPIQKNEQKGYKKLQAVLKTVMLRRTKGTLLDGEPIINLPPRVVELKKVDFTEEEREFYTR LEIDSRAQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPRLVSGLDSSSLGSSSVEMAKKLPREKQLCLLNCLEASLASCGICSDPPEDAVVSVCGHVFC RQCVFEHLTGDDSQCPMSNCKVRLNVSSVFSKATLNSSLSDEPGQDCSDSELVAAVSSSSDNRPHDSSKIRVALEILQSLTKPKDCLPTGNLLENSVDEN VACYDTSSGSRDSVKDGMDKRCLPIKAVGEKAIVFSQWTGMLDLLEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA CHVLLLDLWWNPTTEDQAIDRAHRIGQTRAVTVLRLTVKNTVEDRILALQQKKREMVASAFGEDENGGRQTRLTVDDLNYLFMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61140		EDA16	embryo sac development arrest ...		Potri.011G046400 [exp]	0	1
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	3.87	0.8794
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.006G272900 [exp]	5.65	0.8223
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	7.34	0.8694
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	10.39	0.8487
AT5G63970			Copine (Calcium-dependent phos...		Potri.005G065700 [exp]	10.95	0.8524
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241800 [exp]	10.95	0.8590
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145530 [exp]	11.35	0.8603
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	13.85	0.8602
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.008G014700 [exp]	14.24	0.8231	Pt-CPK2.2
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.017G017800 [exp]	15.29	0.8315

Compare expression of checked genes

Potri.011G046400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.