Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 259 / 8e-85 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52760 255 / 2e-83 LysoPL2 lysophospholipase 2 (.1) AT2G39420 254 / 5e-83 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 253 / 9e-83 alpha/beta-Hydrolases superfamily protein (.1) AT5G14980 248 / 1e-80 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 242 / 2e-78 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G55180 241 / 5e-78 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 241 / 9e-78 alpha/beta-Hydrolases superfamily protein (.1) AT5G19290 240 / 1e-77 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114800 [exp] 259 / 4e-84 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G212200 [exp] 256 / 4e-84 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 254 / 6e-83 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 251 / 3e-82 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 250 / 2e-81 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.001G175000 [exp] 249 / 2e-81 AT1G52760 554 / 0.0 lysophospholipase 2 (.1) Potri.014G129000 [exp] 244 / 5e-79 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 241 / 7e-78 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 232 / 3e-74 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011212 [exp] 476 / 1e-170 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10018466 [exp] 406 / 6e-144 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 265 / 2e-87 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10025754 [exp] 261 / 8e-86 AT1G52760 564 / 0.0 lysophospholipase 2 (.1) Lus10035909 [exp] 260 / 2e-85 AT1G52760 568 / 0.0 lysophospholipase 2 (.1) Lus10023448 [exp] 260 / 6e-82 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 250 / 6e-81 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 249 / 9e-81 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 246 / 3e-80 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 247 / 4e-80 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.011G046500.1 pacid=42781228 polypeptide=Potri.011G046500.1.p locus=Potri.011G046500 ID=Potri.011G046500.1.v4.1 annot-version=v4.1 ATGGAGCAAGAAAATCTCAAGCCCCGTGAAACAGAAGTCCACTTTTGGGGCAATACCCCAGAGGATGAGTACTACAAACAACAAGGGATCAAAGCTTCAC GGTCATCCTACACATCACCAAGAGGCCTCTCTCTTTTCACAAGATCATGGCTCCCAATCTCCACCGATCCTGTACTTGGCGTTATGTGTATGGTTCATGG TTATGGAAACGATATCAGCTGGACTTTTCAGTCCACGGCTATCTTCCTAGCCCAGATGGGTTTTGCCTGCTTTGGACTTGACATTGAAGGCCATGGTAAG TCTCAAGGCCTTAAGGGCTATGTACCCAATGTTGATCTTGTTGTTCAAGACTGTCTTTCTTTCTTTGATTCCATCAAGAATGACACACAGTTTCATGGGT TGCCTTTCTTTTTGTATGGTGAATCAATGGGCGGTGCTATTTGTCTCTTGATTCATTTAGCAAACCCTAAAGGGTTTGATGGTGCAGTTTTGGTCGCCCC CATGTGCAAAATCTCTGATAGTATAAAACCCAGATGGCCAATTTCTGATATTCTATTATTGGTGGCAAAATTTTTGCCTACTTTAGCTATAGTTCCAGCT GCTAGCATTCTGCACAAGTCAATCAAAGTAGAGAGAAAAGTGCCAATTGCAGAAATGAACCCAATGAGATATAGGGGGAAACCAAGATTGGGAACTGTTG TCGAGCTTCTAAGGGTTACTGATTATTTGAGTCAAAATTTGAGAAATGTTACCATTCCATTTATTGTATTACATGGTAGTATGGATGTTGTCACTGATCC AAAAGTGAGCGAAAGTTTGTATGAGGAGGCAAAAAGCGAAGACAAGACGATAAAGATTTATGATGGAATGGTGCATTCTTTGCTTTTTGGAGAAACTGAT GAGAATGTTGAAATTGTTCGGCAAGATATTATATCTTGGTTGAATGATAGATGCAAGCAAAACTATCAGTAA
AA sequence Show only first row Show all	>Potri.011G046500.1 pacid=42781228 polypeptide=Potri.011G046500.1.p locus=Potri.011G046500 ID=Potri.011G046500.1.v4.1 annot-version=v4.1 MEQENLKPRETEVHFWGNTPEDEYYKQQGIKASRSSYTSPRGLSLFTRSWLPISTDPVLGVMCMVHGYGNDISWTFQSTAIFLAQMGFACFGLDIEGHGK SQGLKGYVPNVDLVVQDCLSFFDSIKNDTQFHGLPFFLYGESMGGAICLLIHLANPKGFDGAVLVAPMCKISDSIKPRWPISDILLLVAKFLPTLAIVPA ASILHKSIKVERKVPIAEMNPMRYRGKPRLGTVVELLRVTDYLSQNLRNVTIPFIVLHGSMDVVTDPKVSESLYEEAKSEDKTIKIYDGMVHSLLFGETD ENVEIVRQDIISWLNDRCKQNYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11090			alpha/beta-Hydrolases superfam...		Potri.011G046500 [exp]	0	1
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	2.23	0.8947	Pt-EU3.1
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.008G164900 [exp]	2.44	0.8916
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.010G073700 [exp]	2.44	0.8912
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.019G069733 [exp]	2.82	0.8818
AT2G47115			unknown protein		Potri.002G190200 [exp]	3.16	0.8804
AT4G38250			Transmembrane amino acid trans...		Potri.009G167900 [exp]	4.58	0.8569	PtrANT3
AT3G57280			Transmembrane proteins 14C (.1...		Potri.003G094300 [exp]	13.03	0.8471
AT2G17710			unknown protein		Potri.005G107800 [exp]	13.63	0.8608
AT1G68300			Adenine nucleotide alpha hydro...		Potri.010G123400 [exp]	15.09	0.8332
AT4G38640			Plasma-membrane choline transp...		Potri.009G132900 [exp]	16.70	0.8198

Compare expression of checked genes

Potri.011G046500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.