Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11080 674 / 0 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT1G61130 632 / 0 SCPL32 serine carboxypeptidase-like 32 (.1) AT4G15100 627 / 0 SCPL30 serine carboxypeptidase-like 30 (.1) AT5G08260 456 / 7e-158 SCPL35 serine carboxypeptidase-like 35 (.1) AT5G23210 438 / 1e-150 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT4G30610 437 / 2e-150 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G17180 436 / 8e-150 SCPL33 serine carboxypeptidase-like 33 (.1) AT2G24000 423 / 5e-145 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G35780 415 / 5e-142 SCPL26 serine carboxypeptidase-like 26 (.1) AT2G24010 409 / 1e-139 SCPL23 serine carboxypeptidase-like 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037800 [exp] 866 / 0 AT1G11080 653 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.005G091700 [exp] 460 / 3e-159 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.007G072300 [exp] 458 / 9e-159 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.005G091800 [exp] 445 / 2e-153 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.006G183200 [exp] 438 / 5e-151 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 430 / 8e-148 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G149400 [exp] 426 / 8e-146 AT3G17180 564 / 0.0 serine carboxypeptidase-like 33 (.1) Potri.008G041800 [exp] 414 / 2e-141 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 414 / 2e-141 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011213 [exp] 787 / 0 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10018467 [exp] 781 / 0 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10037810 [exp] 444 / 8e-153 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10010190 [exp] 442 / 3e-152 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 441 / 8e-152 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10015489 [exp] 429 / 9e-147 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 427 / 2e-146 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10010191 [exp] 423 / 1e-144 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10023505 [exp] 421 / 2e-144 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 419 / 2e-143 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.011G046600.1 pacid=42780349 polypeptide=Potri.011G046600.1.p locus=Potri.011G046600 ID=Potri.011G046600.1.v4.1 annot-version=v4.1 ATGGATTTGGTACCTAAGGTGACAAGTTTCCTCACTTTGGTTTTCATTGCTTTATCCTCTTTGGAGCCTGTAGTCTGTATTAGACACTGGCAATTGTCTG GCCAGCCACTGGTAGACGAGCATCTTGTAACTAATTTGCCAGGCCAGCCAGATGTGAACTTCAAGCACTATGCTGGCTACCTTACAGTCAATGAACAGAA TGGAAGGGCATTGTTTTACTGGTTCTATGAGGCCACTACTCATCCTGATAACAAACCTCTAGTCCTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTA GGATATGGAGCAACACAAGAGATTGGCCCTTTCATAGTGGACACTAATGGGGATGGACTTAAATATAATCCTTACTCTTGGAATACAGAGGCCAATATGT TATTCTTAGAATCTCCAGTTGGAGTTGGGTTTTCATATTCAAACACTACTAGTGATTATAATATTCTGGGAGATGAATTTACTGCAAATGATACCTATGC TTTCCTGCATAAGTGGTTTCTCCTGTTTCCATCATATAGATCGCGGGCGTTTTATATTGCAGGAGAGAGCTATGCAGGAAAATATGTTCCTGAGCTTGCT GAGCTTATAAATGACAAGAATAATGATACTTCGCTTTACATCGACCTCAATGGTATTCTGTTGGGTAATCCTGAAACAAGTGACGCTGAAGACTGGAGAG GTATGGTGGACTATGCTTGGAGCCATGCTGTCATATCAGATGAAACTCATAAGATAATCAGACAAAGCTGCAACTTTGACAGTAATGACACATGGAGTAA CGATGATTGTGCTGAGGCTGTTGATGAATTACTCAAACAGTACAAGGAGATAGATATTTACAGCCTCTACACCTCAGTTTGCATAGGTGATTCAGCAAGT TCAGATGATAAATTTACACAGATCATGTTTAGGCGCTCATCCAAGATGATGCCAAGGATTATGGGTGGTTATGATCCATGCCTTGATGAATATGCAAAAG CTTTCTACAACAGACCAGATGTTCAAAAGGCTCTCCATGTCAGTGATGGTCACCATCTCAAGAACTGGAGCATCTGCAACACTAAGATATTTGTTGAATG GTTGGAACCGAGGCCATCAGTTCTTCCTATATACAAGAAGCTGATTACAGCAGGACTTAGAATATGGGTTTACAGTGGTGATACAGATGGAAGAGTTCCT GTACTATCTACAAGATACAGCTTAAGTTCTCTGGGCCTGCCAATCACCAAGGCATGGAGACCCTGGTACCACCAGAAGGAGGTCAGTGGTTGGTTCCAAG AATACGAGGGGCTAACATTTGCAACATTTAGAGGAGCTGGACATGCTGTGCCACTCTTCAAACCAAGCAACTCACTTGCATTTTTCTCAGCCTTTCTTCT AGGAGAATCCCTGCCTTCTGTGAGATAA
AA sequence Show only first row Show all	>Potri.011G046600.1 pacid=42780349 polypeptide=Potri.011G046600.1.p locus=Potri.011G046600 ID=Potri.011G046600.1.v4.1 annot-version=v4.1 MDLVPKVTSFLTLVFIALSSLEPVVCIRHWQLSGQPLVDEHLVTNLPGQPDVNFKHYAGYLTVNEQNGRALFYWFYEATTHPDNKPLVLWLNGGPGCSSV GYGATQEIGPFIVDTNGDGLKYNPYSWNTEANMLFLESPVGVGFSYSNTTSDYNILGDEFTANDTYAFLHKWFLLFPSYRSRAFYIAGESYAGKYVPELA ELINDKNNDTSLYIDLNGILLGNPETSDAEDWRGMVDYAWSHAVISDETHKIIRQSCNFDSNDTWSNDDCAEAVDELLKQYKEIDIYSLYTSVCIGDSAS SDDKFTQIMFRRSSKMMPRIMGGYDPCLDEYAKAFYNRPDVQKALHVSDGHHLKNWSICNTKIFVEWLEPRPSVLPIYKKLITAGLRIWVYSGDTDGRVP VLSTRYSLSSLGLPITKAWRPWYHQKEVSGWFQEYEGLTFATFRGAGHAVPLFKPSNSLAFFSAFLLGESLPSVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Potri.011G046600 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G115900 [exp]	12.16	0.9093
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.004G179100 [exp]	18.89	0.8684
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.014G018700 [exp]	21.07	0.8309
AT2G39855			unknown protein		Potri.010G196400 [exp]	22.27	0.8667
					Potri.001G141801 [exp]	30.52	0.8967
					Potri.005G053150 [exp]	36.87	0.8208
AT2G22420			Peroxidase superfamily protein...		Potri.007G096200 [exp]	42.33	0.8306
AT1G03220			Eukaryotic aspartyl protease f...		Potri.008G203100 [exp]	45.60	0.8882
AT4G12010			Disease resistance protein (TI...		Potri.019G069866 [exp]	49.96	0.8873
					Potri.012G100300 [exp]	75.98	0.8781

Compare expression of checked genes

Potri.011G046600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.