Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61100 483 / 9e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) AT4G27430 392 / 2e-120 CIP7 COP1-interacting protein 7 (.1.2) AT5G43310 230 / 2e-62 COP1-interacting protein-related (.1.2.3.4) AT3G14172 148 / 4e-36 unknown protein AT1G17360 117 / 2e-26 unknown protein AT1G72410 110 / 2e-24 COP1-interacting protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038300 [exp] 1292 / 0 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.001G403700 [exp] 509 / 1e-163 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.011G122900 [exp] 495 / 3e-158 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.010G070200 [exp] 243 / 2e-66 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.008G168300 [exp] 243 / 2e-66 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.001G164900 [exp] 154 / 9e-38 AT3G14172 521 / 1e-161 unknown protein Potri.003G070400 [exp] 150 / 9e-37 AT3G14172 544 / 3e-170 unknown protein Potri.019G064000 [exp] 89 / 6e-18 AT3G14172 99 / 8e-21 unknown protein Potri.013G091900 [exp] 83 / 6e-16 AT3G14172 122 / 7e-28 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011217 [exp] 536 / 6e-178 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10018471 [exp] 520 / 1e-171 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10043092 [exp] 376 / 8e-115 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10032660 [exp] 334 / 3e-98 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10021172 [exp] 231 / 2e-62 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10011809 [exp] 212 / 3e-56 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10008140 [exp] 142 / 3e-34 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2) Lus10013178 [exp] 139 / 4e-33 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10000225 [exp] 124 / 8e-31 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1) Lus10025112 [exp] 87 / 1e-19 AT1G61100 50 / 8e-08 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G046900.1 pacid=42780341 polypeptide=Potri.011G046900.1.p locus=Potri.011G046900 ID=Potri.011G046900.1.v4.1 annot-version=v4.1 ATGGTCACAATGAATTCTTCAACTCTTCTTGACTATGCCCTCTTTCAACTCACTCCAACTCGAACCAGGTGTGATCTGGTTCTCTTCTATGGAGGCAAGA ATGAGAAGCTGGCTTCTGGGTTATTTGAACCATTCATTTCACACCTTGAATATATTAAAGATCAGATTTCCAAAGGAGGGTATTCCATCAAACTTTGCCC ACCAACCAAAAATGCTCCTTGGTTCACCAAAGGCACTTTTGAGAGATTTGTTCGCTTTGTTAGTACACCAGCAGTGCTCGAGAGATTTATCAGTCTAGAA AGAGAAATTCTGCAGATTGAGGAGAGTTCCGTTCAGGCCAATGAATTGTCAAACACAAATGTAGCTGGACAGCTGGAGGAAGGGAGTGGACCAGCTGCCA ATCGTATCACACGGAAGTCAAGCGATTCCTCCAAGCTAAAAGGTGAACTTGAGAAAAGTGATCATGCTGTGCCTGAGGAAAACTCCAAGATCCAATTTCA ACGGCTTCTGGAAGCCCGGAAAACATTGCTTCGCAAAGAGCAAGCAATGGCTTATGCCCGTGGTCTTGTTGCTGGATTTGAAGTGGACAACATAAATGAT CTCATCTCCTTTGCAGATGTTTTTGGAGCTTCACGGTTAAGGGAAGCATGCAACAATTTCAAGGAGTTATGTAAAAAGAAGCATGGGGATGGTCTTTGGA TGGAAGAATTAGCAGCAATGGAGGCATGCCCTCCATCAGAACTGTCATTTTTGGGAACTTCAGGAATTGTACTTGCAAATGAAATTAGTGCCCTTAATCA GAATGTCATGCTAAACTTGGCAAACAATGGGGTATCCACTGGTGATTCTGTGCCCAAAGGATCTTCAGATGCATCAAGATCTGATTCAACAGCAGACAGC AAAAAGGATGGAAGCATGGCAACATCTGACCAGATACCATCAACTAATGCCAAAGTTCAAGTACCAATGCAGTGGCCATATATGTACAATTTCCAAGGCC CTGTTCCTCAATTTCCTCCATATCAAGGATATCCTTTCCCTACCATGCAGCCTATTCCTCCTCATTATCCAAGAAATATGCAGTGGCCTTCTAGTGTGAA AGAACTTAGTCCAGGAAAGAAGGATAAATCCATGAACAAAAAAGGATATGAATATTCAGGAGAAGAAAGACAAACAGAGTCCAGTGACTCTGATGTGAAT GATTCAGATTCCCATACGGATCAGGAAAAAAAGCGCTCTTCTACAGATGTTCATTACAAGAAAAAACACAGGAAGAAGTCATCTAAGACCGTGGTTATCC GCAACATTAACTACATCACCCCCAAGAGAAGAAATGGAGGAAGTGGTAGTTTTTCTGATGAAACTTCTACGGATGAGGATGATTTCATTGATGAAGATAC CATCAAACAGAAGGTAGATGATGCAGTTGGACCGTTGGAGAAATTGCACAAGTCAAATTCCAGTACACATAGAAGAAAAGGTTTGAACAAGAGTAACCAC AAGTCAAATGAATCAAGTGATTCTCCCAACCAGGATTTTGCTGATGGCCTTGTTTCAAATACATCCAAGGTAGGAAGAACAAACGAGAATTGGGATACTT TCCAGAGCCTTCTGATTAAAGATGATTGCACGGTTAATGGAGTAGAAAAGTTGCAGCCAGTGGATGTTCGGGAAGAGCATTTCATAATCAGAAGTGCTGG AGATGGAACTTCATCAGGGATCAATCCTGCTATGGAATTGGGACCAGAGAAAGTACTGAACAAAAGGATGGCTGCGGGTGATTCATTTGTTGTGACTCAG AGGGATGGGGAACATGAGGATAGAGTTAGGCCGGAAGATATTGAAAATGCAGAGGGTTTTAGACCAATCATGAAGAGAAGGGACTCGTCAGATGAAGATT TGCTAATTTCACGAAGATTAGAAGAATCTAGTGGACTTGGAGGTATCTTATCTCGTACTAGTAGGACATCCATAATCAAGCCTGGAAAAGGAGATGATTG GTTTGTTATCAATCATTCAGGGAAACCAGAAAGCCAGGATGCAGCCAATTGCATGCTGTCACTAGAGGGTGATTCTTCAAATGCCAAGCCAAGTAGAAAA GACGTACTTGTTGATGATTCTTTCATGGTTCACGCTCGATCAACTGCAGATGATCCATATGATTCACAGTGGAAAACTGACATAAGAATGGCCGCGGATC TAACTTTATCTTCCCAGCCAGAAAATGGAACTGCAGATCATAATCATGAAGTACTGGATGCCTATGAACCGAATGACCTTTGTGCGGTCCTTGAACGGCA TTCTGGATTTGAATCTACAAGAGAATCCTGGGACACAGACCGGGGAATTGACATATCATTCATGGAAGCTCAGAGAAGCCCGAACGTTGAATCTGGAGAT CAAATTGAGAAGAAGCTTCCTTCAAACACTGACAAGACCGCCATCAAGAAGAATGGAATTATTGGGAGAAAAGTTCCAGAAGTGAGGTCTAAAATTGTGC AAGGATACCTCGGTAAGAGCAAAACTGAGATGACGTCTAAAGGCAAGAAATCATCACTTGCCAGTAAGCCCGCAATTCAGAAGAGCAAGCAAGAGAAGGA AGAAGAGACTAGGAAGAAAATGGAAGAGTTAGTGATTCAACGCCAAAAAAGGATTGCTGAAAGAACTGCAGCAGCTGCCGGTGCTCTGGCAGCAACCAAG AGAGTATCATTGGAGAGCAAAACAGTGAAAGGTTCTCCCAAGTCTGACAAAAGAAATCATTCCTATACCCCCGAGAGACAAACAAGATAG
AA sequence Show only first row Show all	>Potri.011G046900.1 pacid=42780341 polypeptide=Potri.011G046900.1.p locus=Potri.011G046900 ID=Potri.011G046900.1.v4.1 annot-version=v4.1 MVTMNSSTLLDYALFQLTPTRTRCDLVLFYGGKNEKLASGLFEPFISHLEYIKDQISKGGYSIKLCPPTKNAPWFTKGTFERFVRFVSTPAVLERFISLE REILQIEESSVQANELSNTNVAGQLEEGSGPAANRITRKSSDSSKLKGELEKSDHAVPEENSKIQFQRLLEARKTLLRKEQAMAYARGLVAGFEVDNIND LISFADVFGASRLREACNNFKELCKKKHGDGLWMEELAAMEACPPSELSFLGTSGIVLANEISALNQNVMLNLANNGVSTGDSVPKGSSDASRSDSTADS KKDGSMATSDQIPSTNAKVQVPMQWPYMYNFQGPVPQFPPYQGYPFPTMQPIPPHYPRNMQWPSSVKELSPGKKDKSMNKKGYEYSGEERQTESSDSDVN DSDSHTDQEKKRSSTDVHYKKKHRKKSSKTVVIRNINYITPKRRNGGSGSFSDETSTDEDDFIDEDTIKQKVDDAVGPLEKLHKSNSSTHRRKGLNKSNH KSNESSDSPNQDFADGLVSNTSKVGRTNENWDTFQSLLIKDDCTVNGVEKLQPVDVREEHFIIRSAGDGTSSGINPAMELGPEKVLNKRMAAGDSFVVTQ RDGEHEDRVRPEDIENAEGFRPIMKRRDSSDEDLLISRRLEESSGLGGILSRTSRTSIIKPGKGDDWFVINHSGKPESQDAANCMLSLEGDSSNAKPSRK DVLVDDSFMVHARSTADDPYDSQWKTDIRMAADLTLSSQPENGTADHNHEVLDAYEPNDLCAVLERHSGFESTRESWDTDRGIDISFMEAQRSPNVESGD QIEKKLPSNTDKTAIKKNGIIGRKVPEVRSKIVQGYLGKSKTEMTSKGKKSSLASKPAIQKSKQEKEEETRKKMEELVIQRQKRIAERTAAAAGALAATK RVSLESKTVKGSPKSDKRNHSYTPERQTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61100			disease resistance protein (TI...		Potri.011G046900 [exp]	0	1
					Potri.018G003650 [exp]	4.47	0.9042
					Potri.008G163401 [exp]	43.45	0.8667
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Potri.009G110800 [exp]	76.83	0.8704
AT1G78260			RNA-binding (RRM/RBD/RNP motif...		Potri.002G098100 [exp]	78.74	0.8233
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Potri.002G244200 [exp]	106.74	0.8128	Pt-XTH2.1
AT3G55646			unknown protein		Potri.008G061700 [exp]	145.77	0.8510
AT4G35160			O-methyltransferase family pro...		Potri.019G093200 [exp]	155.84	0.8478
AT1G62600			Flavin-binding monooxygenase f...		Potri.013G019900 [exp]	159.65	0.8491
AT4G18820			AAA-type ATPase family protein...		Potri.004G061700 [exp]	162.72	0.8480
					Potri.018G131900 [exp]	200.29	0.8293

Compare expression of checked genes

Potri.011G046900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.