Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04980 357 / 2e-109 unknown protein AT1G11070 313 / 5e-94 unknown protein AT1G61080 295 / 2e-86 Hydroxyproline-rich glycoprotein family protein (.1) AT4G18570 79 / 8e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07120 74 / 9e-14 unknown protein AT3G25690 67 / 5e-11 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G48280 57 / 3e-08 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038400 [exp] 631 / 0 AT4G04980 387 / 4e-121 unknown protein Potri.001G317001 [exp] 333 / 2e-102 AT4G04980 320 / 5e-98 unknown protein Potri.001G279000 [exp] 80 / 2e-15 AT1G07120 440 / 2e-153 unknown protein Potri.009G073600 [exp] 76 / 5e-14 AT1G07120 434 / 4e-151 unknown protein Potri.001G460300 [exp] 72 / 1e-12 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 70 / 7e-12 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.004G054900 [exp] 66 / 7e-11 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 62 / 1e-09 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G130800 [exp] 62 / 1e-09 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018473 [exp] 387 / 8e-120 AT4G04980 347 / 1e-104 unknown protein Lus10011209 [exp] 382 / 2e-117 AT4G04980 336 / 2e-100 unknown protein Lus10038307 [exp] 379 / 3e-117 AT1G11070 330 / 2e-99 unknown protein Lus10031636 [exp] 303 / 6e-91 AT4G04980 313 / 3e-95 unknown protein Lus10033704 [exp] 300 / 1e-89 AT4G04980 311 / 4e-94 unknown protein Lus10036174 [exp] 274 / 2e-86 AT4G04980 236 / 6e-73 unknown protein Lus10036173 [exp] 197 / 6e-54 AT4G04980 96 / 2e-20 unknown protein Lus10000986 [exp] 73 / 6e-13 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 72 / 1e-12 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034382 [exp] 71 / 3e-12 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G047100.2 pacid=42782059 polypeptide=Potri.011G047100.2.p locus=Potri.011G047100 ID=Potri.011G047100.2.v4.1 annot-version=v4.1 ATGTTCGAACTCCCCCTGTACTTTGAATGTTTCTGCTGTTCTTCACGACAGAAACTTGAAATATCCCCTCTGTCAATCTCTTGTTTGAACAAATATCTAT GGTTTACCATCATTTTCATTCTTGTTACGTTTCTTTATGTTAATTCTGGTTCTAGCTTAAAAGTTATGTCAACTGGTATCTTCTGTGGTTTAAAGCCTTT GCTTTTTGGAGGCAAGACTTCTAGATTTGAGGTGGTGAAAAGCGCTCACCTAGTCAAGGGTCAGAAGAAGGAATCACAAGAACCAAAGATGGAGCGTTCA CGTTCTCGTGGATCTCCAGGCAACTTCATTTTGATGATGGAGCTCAGGAAGAAAATAATTACCTTCAGAGACATCATTGACCTACCACCTTTCGATGGCT CTCTGAGCATAAACGAGCTGGTGATGGGAACAATGAAAGATCTGCACAAGTTTTACCCTGAAATCATACCCAGTAGTCAACTGTCAGAAGTTAAAGGAGC ATCTATCGATAAGGTTCTCATCTACTTTTGTGAGGCTTTGAAATCAATTGGGGATTCATGGATGATGAATCAAGAATGGATGGACAAAGCTACATACAAC ATGTACAATAACAATGATCACAGGATCAATTCAGAACAAATAGTTGAAATTGCTTTGGCGACACTCACCTGCCTGATTAAGATACCAAGAGAAATGTTTG ATGTCATGGATGAATATGAGCCAAATAAAGATTGTTCAAAATCCAACGCATTCAGCAAAATCTTGACGGGGTCCTATTCAGACATCAATAGCTACAGCCC ATGTGGTGCTTCTCCAGAGACTCCTACATCAGTTCTTCCTCAGTTTATGGGTTCTCCTGCCTCGGTAGAATTTGCAAATTTTTATTGCTCTTCTCCTCGT CTCCGGTCTCTGAGAGCTCAGGCACTTGGGAAATTGAACCCCATGGACATAAAACGTCTCTCGTTCCAATACATGCCTTCAAACCTGGAAACTCAAGACG GCAACAGTTTGAACAGAAAAGACTCTGTGGATGATGAAACAATGGCAGAAATGGAAGCAAAGAGCAAACCTTTGTACCAAACGAGCAATTCAGATGAGGA ACTGATGTTTGAAATGGAAGCAAGCAGCAATTCTGAAGTGAAAAAAGCTTCTGGCATTGAGGATCCCAGAGATTACAGCTCCAAAACACGAATGCCACAG ATTGCAGCATCTGAGATTACTATAGTGACAACTAAAGCCACAGGATTGTTAAAGCCATCAGCAGCATTGTCACAAAATGCATCACAAGTTCCACCAGCGC AGCCACTCATATCCTCACCGATGATGGTAGACGTGGTAGCAACACCACTACAACCACCATCTACTCCGCAACCACTGAAGTTGCAACCAGATGTAGCAAT CCCACAGCCACCACCTCCACCGTCACTGCCACCAATTGTGCTGCAGCCAACGACTGTTACAGTGGGAAGTGTACCACTTCCGCCGCCGCCGCCACCTACT ATGTCAAAAACTGTAGCAGCAGCAGCAGCACCTCCACCGCCACCACCCATGGCATTTGGAACCGCAACAGTGGCACTCCCACCACCACCTATGTTATCAG GAAGCGGAACAGTATCACCGACGCCGCCTCCGCCACCACCTCCTCAAACATCAACTGCAAGAACTGCATCACCTCCTCCCCCACCACCCATGATGTCTTC AAAAGGATCCATGCCATTGCCGCCGCCACCACCACCGATGCCACTCGGAAATGGAGCTGCTCCACCACCTCCTCCACCTGGTGCAGCAAGATCCTTACGT CCCAAGAAAACACAGACTAAACTGAAGAGATCAAGTCAGATGGGTACTCTGTATCGGGCTCTTAAGGGGAAGGTGGAAGGAGGAAATCAAGTTACTAAAT CATCTAGTGGAAGAAAGGGTCCAGCTTCAAGCAGTGCTGGTGGAAAGCAGGGAATGGCTGATGCACTAGCAGAGATTACAAAGAGATCAGCATACTTCCA ACAAATTGAAGAAGATGTTCAAAAGCATGCGAAGGCAGTCACAGAGCTGAAGGCTACCATCAGTAGTTTCAAAACGAAAGACTTGACAGAATTGATCAAG TTCCACAAGCATGTTGAATCCATTCTTGAGAATTTAACTGATGAAACACAGGTGCTTGCAAGATTTGAAGGTTTTCCTCAGAAGAAACTGGAAGCATTAA GGACTGCAGCTGCCCTAGGCTCGAAGTTGAATGGAGTAGTCTCTGAACTGCAAAATTGGAAGATACAGCCTCCACTAGGCCAACTTCTTGACAAGGCCGA ATGCTACTTCAACAAGATCAAAGGAGACCTTGATGCCTTGGAGAGGACCAAAGATGAAGAATCCAAGAAATTTCGTAGTCACAACATCGACTTCGACTTC TATATCCTTGTACAAATCAAAGAGTCAATGGTGGATGTTTCTTCAAACTGCATGGAATTGGCACTCAAGGAGAGGAGGCAAGCAAAAGCAGCAGGGAAAG CAGTAACTAGAACCAAAACTGAACCTAAAAAGGCCTGTGCTAAAATGCTTTGGAGGGCTTTCCAATTCGCATTCCGGGTTTATAGCTTTGCTGGTGGACA TGATGATCGAGCTGACAAGCTGACAAGAGAATTGGCCCATGAAATAGAGACTGATTCTCATGATCAATGA
AA sequence Show only first row Show all	>Potri.011G047100.2 pacid=42782059 polypeptide=Potri.011G047100.2.p locus=Potri.011G047100 ID=Potri.011G047100.2.v4.1 annot-version=v4.1 MFELPLYFECFCCSSRQKLEISPLSISCLNKYLWFTIIFILVTFLYVNSGSSLKVMSTGIFCGLKPLLFGGKTSRFEVVKSAHLVKGQKKESQEPKMERS RSRGSPGNFILMMELRKKIITFRDIIDLPPFDGSLSINELVMGTMKDLHKFYPEIIPSSQLSEVKGASIDKVLIYFCEALKSIGDSWMMNQEWMDKATYN MYNNNDHRINSEQIVEIALATLTCLIKIPREMFDVMDEYEPNKDCSKSNAFSKILTGSYSDINSYSPCGASPETPTSVLPQFMGSPASVEFANFYCSSPR LRSLRAQALGKLNPMDIKRLSFQYMPSNLETQDGNSLNRKDSVDDETMAEMEAKSKPLYQTSNSDEELMFEMEASSNSEVKKASGIEDPRDYSSKTRMPQ IAASEITIVTTKATGLLKPSAALSQNASQVPPAQPLISSPMMVDVVATPLQPPSTPQPLKLQPDVAIPQPPPPPSLPPIVLQPTTVTVGSVPLPPPPPPT MSKTVAAAAAPPPPPPMAFGTATVALPPPPMLSGSGTVSPTPPPPPPPQTSTARTASPPPPPPMMSSKGSMPLPPPPPPMPLGNGAAPPPPPPGAARSLR PKKTQTKLKRSSQMGTLYRALKGKVEGGNQVTKSSSGRKGPASSSAGGKQGMADALAEITKRSAYFQQIEEDVQKHAKAVTELKATISSFKTKDLTELIK FHKHVESILENLTDETQVLARFEGFPQKKLEALRTAAALGSKLNGVVSELQNWKIQPPLGQLLDKAECYFNKIKGDLDALERTKDEESKKFRSHNIDFDF YILVQIKESMVDVSSNCMELALKERRQAKAAGKAVTRTKTEPKKACAKMLWRAFQFAFRVYSFAGGHDDRADKLTRELAHEIETDSHDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04980			unknown protein		Potri.011G047100 [exp]	0	1
					Potri.005G038600 [exp]	9.64	0.8172
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Potri.003G015800 [exp]	21.95	0.8188
AT4G31830			unknown protein		Potri.018G106300 [exp]	34.00	0.8148
					Potri.004G019766 [exp]	35.77	0.8137
AT5G50120			Transducin/WD40 repeat-like su...		Potri.012G076000 [exp]	36.82	0.7478
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.001G315200 [exp]	44.47	0.7863
AT1G63450		RHS8	root hair specific 8 (.1)		Potri.001G105300 [exp]	57.46	0.7843
					Potri.012G066225 [exp]	75.16	0.7845
AT2G21110			Disease resistance-responsive ...		Potri.009G130900 [exp]	78.65	0.7144
AT4G21530		APC4	anaphase promoting complex 4, ...		Potri.004G034900 [exp]	93.16	0.7753

Compare expression of checked genes

Potri.011G047100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.