Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21660 737 / 0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) AT1G11520 157 / 1e-44 pliceosome associated protein-related (.1) AT1G67210 43 / 0.0004 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1), Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G039000 [exp] 891 / 0 AT4G21660 740 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Potri.015G130201 [exp] 43 / 6e-05 AT4G35830 145 / 2e-41 aconitase 1 (.1.2) Potri.004G104400 [exp] 44 / 0.0003 AT5G38600 404 / 3e-134 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) Potri.017G111300 [exp] 44 / 0.0004 AT5G38600 400 / 4e-133 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018475 [exp] 761 / 0 AT4G21660 756 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Lus10011207 [exp] 761 / 0 AT4G21660 756 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04037 [poplar] [flax] DUF382 Domain of unknown function (DUF382) PF04046 [poplar] [flax] PSP PSP
Representative CDS sequence Show only first row Show all	>Potri.011G047600.1 pacid=42780607 polypeptide=Potri.011G047600.1.p locus=Potri.011G047600 ID=Potri.011G047600.1.v4.1 annot-version=v4.1 ATGACCGTAGAAACTCTGCCATATCAAAACCACGTAGTCTCCAATGGAGATCTAGCCTCAACTAACCCTAACTCTACAAAGAAATCCAAAGAGAGCGAAC GCCGTCGTCGCAGACGCAAGCAGAAGAAGAACAAGTCTCAGGCACCCGACGCTTCAGCCGCCGCCGCAGACGGAGACGACAGCGACGCCGCCAATGGTGA TGGTGGCGATGCAAAGGAGAACGCCGATCCTCAACAGGTTATGGAGCAAGTTGTAATTGAGTATGTCCCTGAAAAGGCAGAGTTAGAAGATGGCATGGAT GAGTTCAGGAATGTTTTTGAGAAGTTCAATTTCCTTCAAAGTGCTGGTTCTGAGGAGAATGATAAAAAGGATGAATCAATCCAAAATGCAGATGCCAAGA AGAAAACCGACTCAGATTCAGATTCAGAAGAAGAAGAAGATAATGAACAAAAGGAGAAAGGCGTGTCAAACAAGAAGAAAAAGCTTCAACGGCGGATGAA AATTGCTGATTTGAAACAGATATGCTCCAGACCTGATGTTGTTGAGGTATGGGATGCAACTTCTGCAGATCCGAAGCTTTTAGTGTTTTTGAAGTCGTAC AGAAATACTGTTCCTGTTCCTAGACACTGGTGCCAGAAAAGGAAGTTTCTGCAGGGTAAGCGTGGTATTGAAAAGCAACCTTTTCAACTTCCTGATTTTA TTGCTGCAACAGGAATTGAGAAAATTAGACAGGCTTACATTGAAAAGGAAGACGGTAAGAAGTTAAAACAAAAGCAACGTGAGCGGATGCAGCCAAAGAT GGGGAAAATGGATATTGACTATCAGGTTCTCCATGATGCTTTTTTCAAGTATCAAACAAAGCCAAAGCTGACCATGCATGGTGACTTATATCATGAAGGA AAAGAGTTTGAGGTAAAGCTTAGGGAGATGAAGCCAGGCAGTCTTTCACAAGAACTTAAAGAAGCTCTTGGTATGCCGGAGGGTGCACCTCCTCCCTGGC TTATTAATATGCAGAGATATGGCCCTCCTCCATCATATCCGCATCTAAAAATTCCTGGACTTAATGCTCCTATTCCTCCTGGAGCTAGCTTTGGATATCA TGCTGGTGGCTGGGGCAAGCCTCCTGTTGATGAATACGGGCGCCCTTTATATGGAGATGTTTTTGGGGTTCAGATACAAGAACAGCCCAACTATGAGGAG GAGCCAGTTGATAAGTCCAAGCATTGGGGTGATTTGGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAACAGCTTGATG AAGAGGAGTTGGAGGATGGTGTTCAATCTGTTGATAGCCTTTCAAGCACACCAACTGGAGTTGAGACTCCTGATGTTATTGACCTTCGTAAGCAGCAGAG AAAGGAACCTGAGAGGCCTCTTTATCAAGTTCTTGAAGAAAAACAAGAGAGAATTGCTGCAGGGACTCTACTTGGAACAACACACACATATGTGGTTAAC ACTGGCTCCCAGGACAAGACAGCAGCCAAAAGGGTTGATCTGCTCAGAGGTCAGAAAACAGATAGAGTTGATGTTACTCTACTACCTGAAGAATTGGAAG TTATGGATAATGTCTTGCCTTCGAAATATGAGGAAGCAAGAGAGGAGGAGAAGCTACGTAGTCAGCGAGAGGATTTCAGTGACATGGTTGCAGAGAATGA GAAGAAGAGGAAGCGTAAGATGCAGGAAAAGGATGGGAAATCGAAGAAAAAGGATTTCAAATTCTAA
AA sequence Show only first row Show all	>Potri.011G047600.1 pacid=42780607 polypeptide=Potri.011G047600.1.p locus=Potri.011G047600 ID=Potri.011G047600.1.v4.1 annot-version=v4.1 MTVETLPYQNHVVSNGDLASTNPNSTKKSKESERRRRRRKQKKNKSQAPDASAAAADGDDSDAANGDGGDAKENADPQQVMEQVVIEYVPEKAELEDGMD EFRNVFEKFNFLQSAGSEENDKKDESIQNADAKKKTDSDSDSEEEEDNEQKEKGVSNKKKKLQRRMKIADLKQICSRPDVVEVWDATSADPKLLVFLKSY RNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDGKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTMHGDLYHEG KEFEVKLREMKPGSLSQELKEALGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHAGGWGKPPVDEYGRPLYGDVFGVQIQEQPNYEE EPVDKSKHWGDLEEEEEEEEEEEEEEEEEEQLDEEELEDGVQSVDSLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKQERIAAGTLLGTTHTYVVN TGSQDKTAAKRVDLLRGQKTDRVDVTLLPEELEVMDNVLPSKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21660			proline-rich spliceosome-assoc...		Potri.011G047600 [exp]	0	1
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Potri.007G035300 [exp]	4.89	0.7468
AT3G13226			regulatory protein RecX family...		Potri.001G467400 [exp]	4.89	0.7585
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Potri.010G208400 [exp]	6.48	0.7634
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018400 [exp]	9.21	0.7423
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.001G155200 [exp]	15.65	0.7299	Pt-HOS1.2
AT5G25060			RNA recognition motif (RRM)-co...		Potri.006G265700 [exp]	16.34	0.7477
AT5G23390			Plant protein of unknown funct...		Potri.008G003000 [exp]	28.98	0.7002
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Potri.003G066200 [exp]	31.28	0.7188	Pt-PSD.2
AT5G04810			pentatricopeptide (PPR) repeat...		Potri.010G241300 [exp]	35.62	0.7225
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G133500 [exp]	46.28	0.7041

Compare expression of checked genes

Potri.011G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.