Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61050 389 / 2e-132 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 349 / 3e-117 alpha 1,4-glycosyltransferase family protein (.1) AT5G01250 344 / 2e-115 alpha 1,4-glycosyltransferase family protein (.1) AT2G38150 323 / 4e-107 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 316 / 7e-105 alpha 1,4-glycosyltransferase family protein (.1) AT4G19900 139 / 2e-35 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G039300 [exp] 755 / 0 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.016G114200 [exp] 395 / 6e-135 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 266 / 1e-87 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1) Potri.015G122200 [exp] 113 / 1e-26 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011206 [exp] 431 / 4e-148 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1) Lus10027770 [exp] 349 / 5e-117 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10035526 [exp] 347 / 3e-116 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 320 / 1e-105 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10035525 [exp] 319 / 3e-105 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10027772 [exp] 317 / 9e-105 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10002496 [exp] 275 / 4e-88 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1) Lus10027771 [exp] 244 / 5e-71 AT2G38150 317 / 8e-97 alpha 1,4-glycosyltransferase family protein (.1) Lus10018315 [exp] 136 / 3e-34 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10017137 [exp] 134 / 2e-33 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF04488 [poplar] [flax] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [poplar] [flax] PF04572 [poplar] [flax] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Potri.011G047700.1 pacid=42782134 polypeptide=Potri.011G047700.1.p locus=Potri.011G047700 ID=Potri.011G047700.1.v4.1 annot-version=v4.1 ATGAACACTATGCATTACCACATCACCAAATTTAAACCGAATTGTCTGGTCTATATGCAGCACTTGCAAAACATAAAAAGATCGATCTTTGCCTTTCTCC TGTGCATACCAACTTCACTTCTTGCTCTTATACTCTTTCTCTTACTTTTTTATAATGGTTTCACTGTTTTCTACTTTCACCTTCCCTTTCCCTCCAATCC TCTGCCAGAACCCGCCAATTTCTCACAGGGAAATCTTGCTAAAAATTCTTTTAAAAAGCTCCCAGCTTCAGTGATGTATGCAGTGAAAGAAGATACCCCA CCCGTGATTTTAAAGACCCTTTTGCCACTTTTGCAAAATCCAGCCATTACAATGATACCAATTAACCATTCTGTGGTTTTTAAGCCAAATAAGACTCACG GATACGAAGCTGTGAAGAGGATGCTGAGGTCTGCCGACAATTTAAAGCGGTTCTCAACAAGAGTAAGAGAATTCTTTGGGAATCATGGATGTAAGGTTAG GTTCTTTATGACTTGGATTTCTTCTTTGAAGTCGTTTGGTGATAGAGAGTTTTTTTCTGTTGAGAGTTTGTTCAGGTCTCATCCAGATGCTTGTTTGGTT ATTGTTTCTAATTCCATGGATTCTGAAAGTGGGAGTCTTGTTTTAAAGCCATTTTTGGATAAACGGTTTAAATTGATTGCTATTAAGCCTGATTTTGATT ATTTATTCAAGGACACTCATGCTGAGAAATGGTTTAAAGGGTTAAAGAAAGGGAATGTTAGCCCTGGAGAAGTTTCTTTGGGTCAAAACATGTCTAATTT GCTTAGGCTTGCTTTGTTGTATAAGTTTGGTGGTATTTATATGGACACTGATGTGATAGTGTTGAAGAGATTTACCAAATTGAGAAATGTTATAGGGGCA CAAACTATTGATCTTGAAACTAGGAATTGGAGCAGATTGAATAATGCTGTGTTGATTTTTGATAAGAAGCATCCATTACTCTTCAAATTCATCGAAGAAT TTGCACTCACATTTGATGGAAACAAGTGGGGTCACAATGGTCCTTATCTGGTTTCAAGAGTTGTTTCGAGAGTCAATGGAAGGCCTGGGTTTAACTTCAC CGTACTGCCTCCTCCTGCATTTTATCCGGTGGATTGGAGTCGAATTAGAAGTTTCTTTAGAGGGCCTAGAGATAAGGTTCACTCTACATGGTTGCATGAA AAACTTGAGCAGATTAAAAGTGAAAGTTTTGCAGTTCACTTATGGAACAAGCAGAGCAGGGAGATTAAAGTGGAAAGTGGAAGCATAATCAATTATATAA TGTTGGATTGTTGTGTCTTCTGCAATTCTTCCAGCTCGAGTTTGTAA
AA sequence Show only first row Show all	>Potri.011G047700.1 pacid=42782134 polypeptide=Potri.011G047700.1.p locus=Potri.011G047700 ID=Potri.011G047700.1.v4.1 annot-version=v4.1 MNTMHYHITKFKPNCLVYMQHLQNIKRSIFAFLLCIPTSLLALILFLLLFYNGFTVFYFHLPFPSNPLPEPANFSQGNLAKNSFKKLPASVMYAVKEDTP PVILKTLLPLLQNPAITMIPINHSVVFKPNKTHGYEAVKRMLRSADNLKRFSTRVREFFGNHGCKVRFFMTWISSLKSFGDREFFSVESLFRSHPDACLV IVSNSMDSESGSLVLKPFLDKRFKLIAIKPDFDYLFKDTHAEKWFKGLKKGNVSPGEVSLGQNMSNLLRLALLYKFGGIYMDTDVIVLKRFTKLRNVIGA QTIDLETRNWSRLNNAVLIFDKKHPLLFKFIEEFALTFDGNKWGHNGPYLVSRVVSRVNGRPGFNFTVLPPPAFYPVDWSRIRSFFRGPRDKVHSTWLHE KLEQIKSESFAVHLWNKQSREIKVESGSIINYIMLDCCVFCNSSSSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.011G047700 [exp]	0	1
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.019G034700 [exp]	11.44	0.8672
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G226100 [exp]	16.34	0.9107
					Potri.007G113350 [exp]	57.25	0.8942
AT3G18050			unknown protein		Potri.012G049000 [exp]	57.44	0.8107
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Potri.013G102400 [exp]	62.34	0.8940
AT2G20870			cell wall protein precursor, p...		Potri.013G144200 [exp]	64.37	0.8939
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128400 [exp]	69.28	0.8938
					Potri.011G073116 [exp]	78.70	0.8932
AT4G33355			Bifunctional inhibitor/lipid-t...		Potri.014G046500 [exp]	80.56	0.8932
					Potri.014G075251 [exp]	82.37	0.8932

Compare expression of checked genes

Potri.011G047700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.