Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DTA4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79760 103 / 7e-25 DTA4 downstream target of AGL15-4 (.1) AT2G38500 66 / 8e-12 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 54 / 1e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G30040 51 / 6e-07 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT5G08640 50 / 2e-06 ATFLS1, FLS flavonol synthase 1 (.1.2) AT4G21200 49 / 3e-06 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT5G05600 49 / 3e-06 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G05010 48 / 7e-06 ACO4, EAT1, EFE ethylene forming enzyme, ethylene-forming enzyme (.1) AT4G10500 48 / 7e-06 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80330 48 / 8e-06 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189400 [exp] 595 / 0 AT1G79760 170 / 4e-50 downstream target of AGL15-4 (.1) Potri.016G134500 [exp] 78 / 1e-15 AT2G38500 244 / 1e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G096800 [exp] 56 / 2e-08 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.006G247700 [exp] 55 / 4e-08 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.008G069800 [exp] 55 / 5e-08 AT3G11150 263 / 4e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G139600 [exp] 54 / 7e-08 AT5G08640 470 / 7e-168 flavonol synthase 1 (.1.2) Potri.008G145300 [exp] 53 / 1e-07 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.016G117100 [exp] 53 / 2e-07 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G418200 [exp] 50 / 1e-06 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025825 [exp] 362 / 6e-123 AT1G79760 176 / 9e-52 downstream target of AGL15-4 (.1) Lus10038277 [exp] 340 / 3e-114 AT1G79760 170 / 1e-49 downstream target of AGL15-4 (.1) Lus10030567 [exp] 55 / 6e-08 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 53 / 3e-07 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 52 / 4e-07 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 52 / 4e-07 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10028068 [exp] 52 / 5e-07 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10007640 [exp] 52 / 6e-07 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 50 / 2e-06 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 50 / 2e-06 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.011G047800.2 pacid=42780325 polypeptide=Potri.011G047800.2.p locus=Potri.011G047800 ID=Potri.011G047800.2.v4.1 annot-version=v4.1 ATGGCTGTTTCACCTGAATACATGCCAGAAAATCCCATTGATTTTCGTGCTCCGCCGCCCTCTCCTATCGCCTCTGGCCGAAGATCATCCGTCACCAATG ATGGAGTTCTCAATGAATTTCTTGAGCACTCTCTACGTGTTCCGGATTTGATTTTACCTGACAATTTCTTTCCAAAACAAAAAATTGTTGAAACACCTCC AAGAATCGATTGTCAATCACTGAATTCTAAGGAAAGTAATTCAGTTCTCAAGACATTGGATTCAATAGCAAGAATCGGGTGCTTCCAACTAGTTAACTTT GGAATTCCAAGTGAGTTTATAAAGTTGGTGTCGGTCATGGCAGCAGGAATCTTTCAGCTTCCTTCTGAAAAGAAGGCGGCGGTGATGAAGTCACCAGAGA AGCCTTATGGATTCGAGGAAGTTCATGGCGATCAAGAGGCCGAGAATGAATTAAGTGAAGAGTTTGTGTGGAGTAAAGATGAGAGTTTGAAATTGGATAT GGAGAGAATATGGCCAACTGGGTATTCAAATTTCAGTCTGGACTGCTGGTTTCAGTCTCCCAATACAAGTGCCAATCTTAACATCTCTTCAAATATGAAT ACTGGTGTGTCGTACGTGAACTATGATGAAGCTACATCTTATGCCCAAGTTCTCATAATTCGCAGCGAGAAAATGGAGACCCTTTCGTCAGATTTAGGGA ATTTGGCTGCGAAGATTCTCCAAGTTCTCCAAGAAAATTGTCCGAGAAAATCAAAGTATGCAAATGATATGATGCAGAGGCAAGATCGCATTGGCCCAGT CTGTTGCCTTTACAAGCATAGACGTGACATTCCAGCTGATCGACTGGCTAGCTCCTTGGGATATGATGTGTTCAGCATGCTAATTAGGGGAACTGACTAC TCCCATGCCTTGTGTTTGCATATATGTGATGGATCATCGCAATTTCATGTTTACTCCAAGAAAAGCTGGGTGTCTTTCTGCCCAGATAAAGATGCGTTGA TTGTCACAGTTGGAGATCAAACACAGGCTTGGAGTGGTGGCCAGTACAAGCAAGTTCTAGGAAGACCTATCTTTAAAGGAGAGGGTGAGGACAATATTTC AATGGCTTTTCTCTATTCTCCTCCAAACACCATTATTTGCTGCTCCAAAACCACCAAGGGAAAGACTCTTTCCCTTGGCCAGCAAGCTATATTGGCTATA ATTTTGACTCTGGTGTACCATTTATTAGTTTATTTTTACAAGAAACTTTGA
AA sequence Show only first row Show all	>Potri.011G047800.2 pacid=42780325 polypeptide=Potri.011G047800.2.p locus=Potri.011G047800 ID=Potri.011G047800.2.v4.1 annot-version=v4.1 MAVSPEYMPENPIDFRAPPPSPIASGRRSSVTNDGVLNEFLEHSLRVPDLILPDNFFPKQKIVETPPRIDCQSLNSKESNSVLKTLDSIARIGCFQLVNF GIPSEFIKLVSVMAAGIFQLPSEKKAAVMKSPEKPYGFEEVHGDQEAENELSEEFVWSKDESLKLDMERIWPTGYSNFSLDCWFQSPNTSANLNISSNMN TGVSYVNYDEATSYAQVLIIRSEKMETLSSDLGNLAAKILQVLQENCPRKSKYANDMMQRQDRIGPVCCLYKHRRDIPADRLASSLGYDVFSMLIRGTDY SHALCLHICDGSSQFHVYSKKSWVSFCPDKDALIVTVGDQTQAWSGGQYKQVLGRPIFKGEGEDNISMAFLYSPPNTIICCSKTTKGKTLSLGQQAILAI ILTLVYHLLVYFYKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.011G047800 [exp]	0	1	DTA4.2
AT5G28150			Plant protein of unknown funct...		Potri.013G038000 [exp]	2.00	0.8405
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	3.31	0.8498
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.007G007400 [exp]	4.00	0.8086
AT3G44716			unknown protein		Potri.009G148200 [exp]	5.00	0.7952
AT2G33845			Nucleic acid-binding, OB-fold-...		Potri.011G114800 [exp]	6.63	0.7737
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.006G261200 [exp]	7.07	0.7433	PPLZ02.2
AT4G18930			RNA ligase/cyclic nucleotide p...		Potri.011G075600 [exp]	7.14	0.7562
AT3G50780			unknown protein		Potri.007G032800 [exp]	7.34	0.7941
AT2G40815			Calcium-dependent lipid-bindin...		Potri.019G065500 [exp]	7.93	0.8100
AT5G59010			Protein kinase protein with te...		Potri.009G039500 [exp]	8.94	0.7867

Compare expression of checked genes

Potri.011G047800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.