Plant FIBer expression Database

Potri.011G047900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61040 687 / 0 VIP5 vernalization independence 5, plus-3 domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G039500
[exp]
980 / 0 AT1G61040 694 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018476
[exp]
669 / 0 AT1G61040 669 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
Lus10011205
[exp]
668 / 0 AT1G61040 681 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03126 Plus-3 Plus-3 domain
Representative CDS sequence
>Potri.011G047900.3 pacid=42781539 polypeptide=Potri.011G047900.3.p locus=Potri.011G047900 ID=Potri.011G047900.3.v4.1 annot-version=v4.1
ATGACGATGGCGGATTTAGAAAATTTGCTGCTTGAGGCAGCGGGAAGGACTGGGAAATCAGGAAGAAACAGGAATTCATTACCTCCATCGAGGAGGCGAA
AACAGGAGGGTTCATATTCGGATGGTGGAAGTGATTCTAGGGATGATGGTTCGGATGATGATCGTGGGTATGCAAGTAGGAAGCCATCTGGTTCTCAAGT
GCCTTTGAAGAAGAGACTGGAAACTAATGAGAGGGATGATGAGGGGGGTAGTCAGGAAGAAGGTGATTATGATGATGGTGGTTCGGATCGTGAGGGTGAG
AGTAGTGATGGATCGGATATTGGTGATGATCTTTACAAAGACGAGAATGATCGGCAGAAGCTTGCTCAGATGAGTGAACTTGACAGGGAGTTGATATTGG
CAGACCGGGCAGACAAGAAAGGGGATAAACATTTGACTGAGAAAATCAGATCGAAAAGGGACAATGATAAGCCAACCCGATCTAGAAAAGAGACTCCACC
TCTTCCATCGTCGCGTGGAGTGCGTTCGTCAGCTAGGTCAGCTGACAGGGCTGCTGCTAAAGATGATGCATTGAATGAATTGAGAGCTAAACGATTAAAA
CAGCAGGACCCGGAGGCTCATCGCAAGTTGAGGGATGCATCTAGAGGATCTGCTGGCAGCAGGGGCTTTGCACAAGTCAAGAAGAATAATTTCACTTCAG
CACGTCTGAGTAGCTCTAGCAGTGAGAGTGAGAGTGGAAGTAGGTCTCACAGTGAGGATGAAGGGTCAACAGGTGATGGTGGAATGGCAGATAGTGATGA
GGATGGGGATCCTGGGTCCCGGGGGCCAACTTATGAAGATATAAAAGAAATTACAATTCGGAGAACAAAACTTGCAAAATGGTTTATGGAGCCTTGGTTT
GAAGAATTGATTATTGGTTGTTTTGTGAGGGTAGGGATTGGTAGATCGAAGACTGGGCCTGTGTACAGGCTCTGCATGGTCCGGAATGTTGATGCTGCAG
AACCTGACAAACCATACAAACTGGAGAATAAGTCAACTTATAAGTATTTGAATGTTACTTGGGGTGCTGATAGCTCTGCTGCCAGGTGGCAGATGGCTAT
GGTGTCAGATTCTGCACCAACTGAGGAAGAGTATAAACAGTGGGTTAGAGAGGCAGAGCGTGGTGGTGGCCGTTTACCAAGCAAACAAGATATCTTGGAA
AAGAAGGAGGCCATACGTAAGTCAAACACTTTTGTGTACTCAGCAGCCACTGTGAAGCAGATGCTGCAGGAGAAAAAATCTGCATCATCGAGACCATTAA
ATGTTGCTGCTGAGAAGGACAGGTTGAGGAGGGAGTTGGAAATTGCACAAAGTAGGCATGATGAGGCAGAGGTTGAGAGGATAGAGGCAAGGATTCTGGA
ACTGGAGGCATCTCGGCAGGCTAAGGTGAAAGATGCTAAGGCTCTTAGGTTGGCAGAAATGAATAGAAAGAACAGGGTTGAGAACTTCAGAAATGCATCA
GAATTGAAGCCTATAAATACAGGTCTAAAAGCCGGAGAAGCTGGGTACGATCCATTTTCAAGGAGATGGACAAGGTCAAGGAATTATTATGTTTCAAACC
CTGCTGGAGGAGATGATGCTGTTGCAGCATCGAATAGTGAGGCAAATGACACAGCGGCACTTGCAGATAGTAATCATGTGGTAGCAGGGGCAATTTCGGA
GTCTGGTGTTGCTGCTACAGCAGCTGCCTTGGATGCGGCAGCTGATGCTGGGAAGTTGGTTGATACCAGTGCTCCTGTGGATCAAGGCACTGAGTCAAAT
ACAATGCATAACTTTGAGCTTGAAATCTCACTGATTGCACTGCAGAAGTTTCGTGGACCTCAGGGTGCCCATGCAGGGTTCATGGCTAGGAAACAGAGGA
TAGAAGCAAATGTTGGATGCCAAGTCCGTGAGAATGATGGGAGAAGACATGCTTTGACCTTGACTGTTGGTGACTACAAGAGAAGACGAGGGCTTCTCTG
A
AA sequence
>Potri.011G047900.3 pacid=42781539 polypeptide=Potri.011G047900.3.p locus=Potri.011G047900 ID=Potri.011G047900.3.v4.1 annot-version=v4.1
MTMADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKPSGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGE
SSDGSDIGDDLYKDENDRQKLAQMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSADRAAAKDDALNELRAKRLK
QQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSSSESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFMEPWF
EELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILE
KKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVKDAKALRLAEMNRKNRVENFRNAS
ELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGDDAVAASNSEANDTAALADSNHVVAGAISESGVAATAAALDAAADAGKLVDTSAPVDQGTESN
TMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTVGDYKRRRGLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G61040 VIP5 vernalization independence 5, ... Potri.011G047900
[exp]
0 1
AT5G64270 splicing factor, putative (.1) Potri.001G310900
[exp]
1.00 0.8577
AT3G16620 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCO... Potri.004G171600
[exp]
4.89 0.8156
AT5G58470 TAF15b TBP-associated factor 15B (.1.... Potri.001G281300
[exp]
6.16 0.7284
AT2G34660 EST4, ATMRP2, A... Arabidopsis thaliana ATP-bindi... Potri.011G091200
[exp]
10.81 0.7433 MRP1.1
AT5G27330 Prefoldin chaperone subunit fa... Potri.005G040500
[exp]
13.26 0.7385
AT1G04780 Ankyrin repeat family protein ... Potri.001G051400
[exp]
16.06 0.7951
AT3G03140 Tudor/PWWP/MBT superfamily pro... Potri.019G048100
[exp]
21.90 0.6939
AT5G25150 TAF5 TBP-associated factor 5 (.1) Potri.017G079100
[exp]
22.18 0.7906
AT3G04340 EMB2458 embryo defective 2458, FtsH ex... Potri.013G048700
[exp]
22.97 0.7296
AT1G32360 C3HZnF Zinc finger (CCCH-type) family... Potri.001G140800
[exp]
24.57 0.6744

Potri.011G047900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.