Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51000 218 / 3e-69 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 213 / 3e-67 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 192 / 2e-58 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 191 / 2e-58 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 178 / 5e-54 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26740 169 / 3e-50 ATSEH soluble epoxide hydrolase (.1) AT2G26750 161 / 3e-47 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 67 / 3e-12 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 47 / 9e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G33180 46 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134800 [exp] 407 / 1e-143 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 404 / 4e-142 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 393 / 5e-138 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 221 / 3e-70 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 221 / 3e-70 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 215 / 3e-68 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 201 / 1e-62 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 189 / 9e-58 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 187 / 2e-57 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011202 [exp] 459 / 4e-164 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 436 / 1e-154 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10001210 [exp] 420 / 2e-148 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 414 / 3e-146 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 412 / 2e-145 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10039814 [exp] 410 / 6e-145 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 395 / 7e-139 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 392 / 1e-137 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 216 / 4e-68 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 215 / 6e-68 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.011G048000.1 pacid=42781693 polypeptide=Potri.011G048000.1.p locus=Potri.011G048000 ID=Potri.011G048000.1.v4.1 annot-version=v4.1 ATGGACCAAATCCAGCACAAATTCGTACAAGTCCAAGGATTAAAGCTCCACGTAGCAGAGATCGGAGCAGGTCCCAAAGTGGTGGTGTTTCTCCACGGAT TCCCTGAGATATGGTACTCATGGCGCCACCAGATGATTTGTCTTGCCAACGCAGGATTCCGGGCCATCGCACCCGACTACAGAGGATACGGGCTATCCAA TCCGCCACCTGTGCCGGAAAAGACCATGTTTGTTGACCTTATCAGCGACCTTCTCGCAATCCTGGATTTCCTCGAAATTACTAAGGTTGTTCTTGTTGCA AAAGATTTTGGAGCCAAGCCAGCTTACTTGTTTGCACTTCTGCATCCAGAGAGGGTCCTAGGGGTTGTGACACTGGGAGTGCCATTCATACCACCAGGTC CAGGTCCAAGTCAATACCAGAAATACCTCCCCGAAGGCTTTTATATATCTAGATGGAAGAAACCTGGACGAGCAGAAGCTGATTTTGGTCGACTTGATGC AAAAACGGTTGTCAGGAACATCTACATTTTGTTCTCTAGAAGTGAAATACCAATAGCTGCTGAAAACCAGGAGATTATGGATTTGGTGGACCTATCCACT CCTCTTCCCTCTTGGTTCACAGAGGAAGATCTAGCGACATATGGAGCCTTGTACGAGAATTCTGGATTCCAAACCGCGTTACAAGTTCCATATAGGTCCC TTGATGAAGATATCAACATAACAGAACCAGTAGTTGAAGTTCCAGCACTTCTGATCATGGGCGACAAAGATTATGTCTTCAAATTTCCTGGGATGGAAGC TTACATAAAGAGTGGGAAGGTCAAAGAGTTTGTCCCTGGTTTGGACATCATATATTTGCCTGAAGGAAGCCATTTTGTTCAGGAGCAATCACCTGACGAG GTGAATCAGCTCATACTTACTTTCCTTAATGCCAGAATCTGGTCGTGA
AA sequence Show only first row Show all	>Potri.011G048000.1 pacid=42781693 polypeptide=Potri.011G048000.1.p locus=Potri.011G048000 ID=Potri.011G048000.1.v4.1 annot-version=v4.1 MDQIQHKFVQVQGLKLHVAEIGAGPKVVVFLHGFPEIWYSWRHQMICLANAGFRAIAPDYRGYGLSNPPPVPEKTMFVDLISDLLAILDFLEITKVVLVA KDFGAKPAYLFALLHPERVLGVVTLGVPFIPPGPGPSQYQKYLPEGFYISRWKKPGRAEADFGRLDAKTVVRNIYILFSRSEIPIAAENQEIMDLVDLST PLPSWFTEEDLATYGALYENSGFQTALQVPYRSLDEDINITEPVVEVPALLIMGDKDYVFKFPGMEAYIKSGKVKEFVPGLDIIYLPEGSHFVQEQSPDE VNQLILTFLNARIWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.011G048000 [exp]	0	1
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Potri.010G117500 [exp]	4.24	0.7242
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G183800 [exp]	8.66	0.7330
AT2G40116			Phosphoinositide-specific phos...		Potri.008G068300 [exp]	12.64	0.6582
AT1G11880			transferases, transferring hex...		Potri.001G008600 [exp]	12.96	0.6674
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G185100 [exp]	18.11	0.7223
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184900 [exp]	27.56	0.7095
AT5G60570			Galactose oxidase/kelch repeat...		Potri.013G077800 [exp]	27.71	0.6411
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.008G063900 [exp]	28.67	0.7088
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.015G016100 [exp]	30.00	0.6740
					Potri.008G130950 [exp]	32.71	0.7056

Compare expression of checked genes

Potri.011G048000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.