Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45080 132 / 8e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03770 130 / 2e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45070 129 / 8e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18590 129 / 2e-35 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT1G74100 128 / 3e-35 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT4G26280 123 / 9e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03750 124 / 2e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G74090 123 / 2e-33 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT5G07010 121 / 1e-32 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT5G07000 119 / 6e-32 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048200 [exp] 360 / 9e-126 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048400 [exp] 333 / 2e-115 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G049100 [exp] 327 / 7e-113 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048100 [exp] 317 / 4e-109 AT1G74100 251 / 1e-81 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.011G048300 [exp] 317 / 5e-109 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048712 [exp] 313 / 2e-107 AT1G18590 265 / 1e-86 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048500 [exp] 284 / 1e-96 AT1G74100 164 / 2e-48 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.012G032700 [exp] 158 / 6e-47 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.003G193400 [exp] 134 / 8e-38 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017878 [exp] 147 / 2e-42 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10008673 [exp] 114 / 8e-30 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 112 / 4e-29 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10033720 [exp] 101 / 4e-25 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033721 [exp] 99 / 2e-23 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10033718 [exp] 96 / 4e-23 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10003070 [exp] 91 / 2e-21 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033719 [exp] 91 / 3e-21 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031623 [exp] 91 / 4e-21 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) Lus10018047 [exp] 88 / 3e-20 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00685 [poplar] [flax] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.011G048700.1 pacid=42781241 polypeptide=Potri.011G048700.1.p locus=Potri.011G048700 ID=Potri.011G048700.1.v4.1 annot-version=v4.1 ATGGAATCCTCTTTGCCTTCCACCCAAATCTTGGATTCTGGTGACAGTGCAGAGAGGAAAAATGAAGCTAAAAATTACAATGAAGTGATGTCCACCTTTC CGAAAGTTAAAGGCTTGAATGGGTATGATTATTACCTGTACCAAGGCTTTTGGTACGCTCCCTTCTTCTTGGAAGGACTCTTGTCTGTTCAAGAGCGCTT CAATCCTCAATCCACTGATATATTTGTCGCCAGTTGTCCAAAAACTGGCACAACTTGGCTTAAGGCCCTCACTTTTGCTATTTTCACACGATCCCGTTTA AGTGGTTCAACAACTAGTTCTTTACTTACCAAGATGCCACATGACTGTGTTCCTTTTTTGGAATATCACCTTGCTCAAAACCCCAGTAATCGGGACTTGG CAATTCCTCTGGTATCTACTCATGTTCCTTGCACTTGTTTACCTAAATCTATCATTTCTTCTTGTTGCAAGATTATTTACATTTCCAGGGACGCAAAGGA TGCTTTTGTTTCTTTGTGGTACTTTCTTGCCAGGCTGCAAATGTCGAAAAATGTTGAACCTCTTCCTCTGGAAGAGGCATTTGAGTTGTTTTGCAATGGA ATTGCAAATTTTGGACCATATTGGGACCATGTTTTAGGGTATTGGAGAGCAAGCTTCGAGTTCCCTGATATTGTTCTTGACATACGAGGAAATGAAGAAA GACACCGCTGCTCATGTTAA
AA sequence Show only first row Show all	>Potri.011G048700.1 pacid=42781241 polypeptide=Potri.011G048700.1.p locus=Potri.011G048700 ID=Potri.011G048700.1.v4.1 annot-version=v4.1 MESSLPSTQILDSGDSAERKNEAKNYNEVMSTFPKVKGLNGYDYYLYQGFWYAPFFLEGLLSVQERFNPQSTDIFVASCPKTGTTWLKALTFAIFTRSRL SGSTTSSLLTKMPHDCVPFLEYHLAQNPSNRDLAIPLVSTHVPCTCLPKSIISSCCKIIYISRDAKDAFVSLWYFLARLQMSKNVEPLPLEEAFELFCNG IANFGPYWDHVLGYWRASFEFPDIVLDIRGNEERHRCSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45080			P-loop containing nucleoside t...		Potri.011G048700 [exp]	0	1
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048500 [exp]	1.73	0.9677
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193400 [exp]	3.00	0.9521
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048100 [exp]	5.47	0.9529
AT3G45070			P-loop containing nucleoside t...		Potri.010G138501 [exp]	7.48	0.9478
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.003G118200 [exp]	8.06	0.8954
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Potri.011G048712 [exp]	9.16	0.9390
					Potri.010G219300 [exp]	9.94	0.9351
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037300 [exp]	10.58	0.9326
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Potri.011G049100 [exp]	11.31	0.9315
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.007G002400 [exp]	11.95	0.9349

Compare expression of checked genes

Potri.011G048700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.