Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11060 674 / 0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) AT1G61030 625 / 0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G039900 [exp] 1296 / 0 AT1G11060 662 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001211 [exp] 739 / 0 AT1G11060 660 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10005857 [exp] 712 / 0 AT1G11060 653 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10011196 [exp] 585 / 0 AT1G11060 614 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10018478 [exp] 574 / 0 AT1G11060 611 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07814 [poplar] [flax] WAPL Wings apart-like protein regulation of heterochromatin
Representative CDS sequence Show only first row Show all	>Potri.011G049300.3 pacid=42780428 polypeptide=Potri.011G049300.3.p locus=Potri.011G049300 ID=Potri.011G049300.3.v4.1 annot-version=v4.1 ATGATCGTGAGAACGTACGGTCGGCGAAACAGAGACGGAGGAAGCCTAACGAGTACCTATTCAGATTCATTAGACGACGACGTAGCTGACCATAATTACT CCTTCAGCGACTCCTTTTCTCTCTCTCAAGAAACTACCCAATCTAATCAAGATTTCTTCAGCCATAACTTCCCTTTCTCTTCTCAAGAATCCACCTCTTA TTCTCTCGATCTCGATCCCTACAATTTCGACGACAATCCCATCCCTAACGGCGTCGTCCCAAGAAAATCGAAGAAGCCGAGGCGTAGTAAGTCAAAATCT GAGAGAAACGGTATTGGGAATTCTAATCTTTTGACTAGCTCGACGACGTTAATGGAGGCTCAAGAATTTGGGGAAATGATGGAGCATGTTGACGAGGTTA ATTTTGCACTTGATGGGTTAAAGAAAGGACAGCCTTTGAGAATTAAGAGAGCTAGTTTGTTGTCTTTGTTAGGGATTTGTGGGACTCAACAACAGAGACG GCTTTTGAGGGCTCAAGGGATGGCCAAGACAATAATTGATGCTATTCTGGGCCTCAGCTTTGATGACTCAACAAGCAATCTGGCTGCTGCTGCACTCTTC TATGTTTTGACGAGTGATGGTCAAGATGAACACATTTTAGAGTCACCAACTTGCATTCGTTTTCTTATTAAATTGTTAAAACCCATCATTTCTACTGCCA CTGAAGATAAGACTCGAAATATAGGCAGTAAGCTTTTAGCATTACGCAAGGATTCTGACATCTTACGAGATACAAGTAAGCTGGCAGATTCTAGCTCTAC TGCCATTGCTGCCAAAGTTCAGGAAATTCTTGTTAATTGCAAGGACATGAAGTCACATTCCGGTGATGATAGTAGAACGGAGAGGCCAGAATTGACTCCA AAATGGATTGCATTGTTGTCCATGGAGAAAGCTTGTTTATCTAAGATATCTTTTGAAGATACATCTGGCATGGTAAGGAAGACAGGGGGGGGCTTTAAGG AAAAGTTACGAGAGCATGGAGGACTTGATGCTGTCTTTGAGGTCACCATGAACTGTCACTCTGTTATAGAGAGGTGGACAAAACATAATTCATCTTCCAT TCAGGATACAAAAGATGACATGCGTCACTTGAGCCTGGTGCTGCTTCTGAAATGCTTGAAAATTATGGAAAATGCTACATTTTTGAGTACCGATAATCAG ACTCATCTGCTTGGAATGAGGGGGAACTCAGATTCTCATGGGCATCGGCTATCTTTTACTAAAATCATAATAAGCATCATAAAAATTCTATCCAGTCTTC ATCTACTTAAGAGTTCTCCTGCTGCTTCCATTGATGGAAACCATTGTAGTCTTTCTGAAAGGAGTGATAATGCTTCTGATTTGGCCTTGATTGACGATGA CAGAGCAGTAGACAGCAATGGGGTTATTTGTATCAGTTCTTCTACAGATTGCTGCAATGAAGAGAGGACCTCCTCTGGGAAACGCTTAAATGTATCTCAG AATTCCATTGCTCGGTTGAGTCTTTCTGCCTCCAGTTCTGAAACTGCCACACGATTTATGAAAAATACTTGTCAACTGAAGATGAGAGTCCCTTCCATGC CCAGTTCATGTAGTGAGACATTAAGGAGTTATGATAGTAATAGGTCAAGGACCAAATTTGGTCTTGTTGAAAAAACTAATTGTACAAAAGATGCCTGCAG TGACTTGTTAGATGATAGCCAAGATCCTTATGCATTTGATGAAGATGATTTTCAGCCCTCGAAGTGGGACTTGCTATCTGGGAAACGAAAAATCTCTCGA ACTCATAATGGTAGGGTAACCCCCAAAGAAGTTGAAAATGGGTGTCAATATAAGCTAGTGAGTCAGGAAGAATCAAGTAATGGTGGAAATGGCCTACACA AATCAAGTAACAGGGAACATCATGATTCACAGAAAAGCTCTTATTGCAATGTTCCTGATGAAGAACATTCCAGCCTTTTGGCAGACTGTCTTCTCACTGC TATCAAGGTTCTAATGAATTTAACAAATGACAATCCTATTGGCTGTCAACAAATTGCTGCTTGTGGAGGACTGGAGACTATGTCTTCATTGATTGCCGGC CACTTCCCTTTGTTCAGTTCATCTATATCTTTCTTTGGTGAGATGCAAGAGGACAGTTCAAGCATTCCACTAGAAAATCAGAATGATATTCATCTTACTG ATCAAGAGTTGGATTTGCTTGTTGCTATATTGGGCCTACTTGTGAACTTGGTAGAAAAGGACGGGGATAACAGATCAAGGCTTGCTGCAACAAGTATTTC GCTGTCAAGCTCAGAAGGGTCAGAAGATGAGAGTCGCAAGGATGTAATTCCACTACTGTGCTCCATCTTTCTAGCCAACCAAGGTGCAGGTGATGCAGCT GGAGAAGGAAACATCGTGTCTTGGAATGATGAGGCAGCTGTATTACAAGGAGAGAAGGAAGCAGAGAAGATGATTGTTGAAGCTTATTCAGCACTGCTAC TTGCATTCCTATCAACTGAAAGCAAGAGCATACATGATTCCATTGCTGATTGCCTCCCGAATCACAACCTGGCTATCCTTGTTCCTGTGTTGGAGAGATT TGTGGCATTTCACTTGACATTAAACATGATATCACCAGAGACTCATAAAGCTGTGAGCGAAGTGATCGAATCATGTAGAATCCGATGA
AA sequence Show only first row Show all	>Potri.011G049300.3 pacid=42780428 polypeptide=Potri.011G049300.3.p locus=Potri.011G049300 ID=Potri.011G049300.3.v4.1 annot-version=v4.1 MIVRTYGRRNRDGGSLTSTYSDSLDDDVADHNYSFSDSFSLSQETTQSNQDFFSHNFPFSSQESTSYSLDLDPYNFDDNPIPNGVVPRKSKKPRRSKSKS ERNGIGNSNLLTSSTTLMEAQEFGEMMEHVDEVNFALDGLKKGQPLRIKRASLLSLLGICGTQQQRRLLRAQGMAKTIIDAILGLSFDDSTSNLAAAALF YVLTSDGQDEHILESPTCIRFLIKLLKPIISTATEDKTRNIGSKLLALRKDSDILRDTSKLADSSSTAIAAKVQEILVNCKDMKSHSGDDSRTERPELTP KWIALLSMEKACLSKISFEDTSGMVRKTGGGFKEKLREHGGLDAVFEVTMNCHSVIERWTKHNSSSIQDTKDDMRHLSLVLLLKCLKIMENATFLSTDNQ THLLGMRGNSDSHGHRLSFTKIIISIIKILSSLHLLKSSPAASIDGNHCSLSERSDNASDLALIDDDRAVDSNGVICISSSTDCCNEERTSSGKRLNVSQ NSIARLSLSASSSETATRFMKNTCQLKMRVPSMPSSCSETLRSYDSNRSRTKFGLVEKTNCTKDACSDLLDDSQDPYAFDEDDFQPSKWDLLSGKRKISR THNGRVTPKEVENGCQYKLVSQEESSNGGNGLHKSSNREHHDSQKSSYCNVPDEEHSSLLADCLLTAIKVLMNLTNDNPIGCQQIAACGGLETMSSLIAG HFPLFSSSISFFGEMQEDSSSIPLENQNDIHLTDQELDLLVAILGLLVNLVEKDGDNRSRLAATSISLSSSEGSEDESRKDVIPLLCSIFLANQGAGDAA GEGNIVSWNDEAAVLQGEKEAEKMIVEAYSALLLAFLSTESKSIHDSIADCLPNHNLAILVPVLERFVAFHLTLNMISPETHKAVSEVIESCRIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	0	1
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	1.00	0.9228
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Potri.001G350200 [exp]	3.00	0.8786
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	3.74	0.9115
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	3.87	0.8902
AT3G17740			unknown protein		Potri.015G033300 [exp]	6.63	0.8958
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	6.70	0.9004
					Potri.009G040500 [exp]	7.74	0.8856
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	8.77	0.8827
AT5G55600			agenet domain-containing prote...		Potri.001G365800 [exp]	9.38	0.8777
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.010G219600 [exp]	9.48	0.8777

Compare expression of checked genes

Potri.011G049300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.