Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21670 1107 / 0 FRY2, FLP1, ATCPL1, CPL1 FIERY 2, C-terminal domain phosphatase-like 1 (.1) AT5G01270 553 / 0 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040000 [exp] 1625 / 0 AT4G21670 1139 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.016G114600 [exp] 655 / 0 AT5G01270 923 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.006G099302 [exp] 231 / 3e-67 AT5G01270 363 / 6e-119 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.006G099402 [exp] 191 / 2e-55 AT5G01270 294 / 2e-95 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.018G108300 [exp] 46 / 0.0001 AT5G58003 499 / 3e-175 C-terminal domain phosphatase-like 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018479 [exp] 1247 / 0 AT4G21670 1100 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Lus10011195 [exp] 1187 / 0 AT4G21670 1044 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Lus10027766 [exp] 530 / 3e-170 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Lus10037233 [exp] 45 / 0.0003 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Potri.011G049400.2 pacid=42782333 polypeptide=Potri.011G049400.2.p locus=Potri.011G049400 ID=Potri.011G049400.2.v4.1 annot-version=v4.1 ATGTATAAATCAGTGGTGTATAAAGGAGAGGAGTTACTGGGAGAGGTTGAAATATATGCACAAGAACAACAGCAAGAAGAAGAGGAGAACAAGAACAAGA GGAAGAGAGTAATTGATGAGATAGTGAAGGGAATCAGAATTAGCCACTTCTCACAAGCTAGTGAGAGATGTCCACCACTTGCAGTGCTTCATACAATTAC ATCTATTGGTGTTTGCTTCAAAATGGAAGAGTCAACAGCATCATCATCAACAAAGATCTCCTCTCAACAAGAATCGCCGCTTCGCCTTTTGCACTCCTCC TGTATCCAAGAAAACAAGACTGCAGTAATGCATCTGGGAGGTGAGGAGCTCCATTTGGTTGCAATGCCCTCCAGGAGTAATGAAAGAAAGCATCCATGTT TCTGGGGATTCAATGTTGCATCAGGACTTTATGATTCTTGTCTTGTCATGCTGAACCTCAGATGCCTTGGCATTGTATTTGATCTTGATGAAACTCTCAT AGTTGCAAATACAATGCGCTCATTTGAAGATAAAATTGAAGCTTTGCAGAAGAAAATAAGCACCGAGGTGGACCAACAGCGAATTCTTGCTATTATTTCA GAGATCAAGAGGTATCAGGATGACAAGATCATTTTGAAGCAATACGTGGAAAATGATCAGGTTATTGAAAATGGAAAGGTGATCAAAACACAGTTTGAGG TCGTCCCGGCCGCGTCTGACAACCATCAACCTTTGGTTCGCCCATTGATACGGTTGCCAGAGAAGAACATAATTTTTACTCGCATCAATCCACAGATTCG TGATACAAGTGTACTTGTGAGGTTGAGACCTGCCTGGGAGGATCTTAGAAGCTACTTGACTGCAAGAGGGCGCAAGCGTTTTGAGGTTTATGTTTGCACA ATGGCTGAAAGAGATTATGCTTTAGAAATGTGGAGGCTTTTGGATCCAGAATCAAACTTGATAAACTCAAATGAATTGCTAGATCGGATTGTGTGCGTCA GCTCTGGTTCAAGAAAGTCATTATTCAATGTCTTTCAAGATGGAATATGCCATCCTAAGATGGCACTTGTGATTGATGACCGCATGAACGTGTGGGATGA GAAGGATCAATCGCGTGTGCACGTGGTTCCTGCTTTTGCTCCTTATTATGCTCCTCAAGCTGAAGCAAATAATGCTGTTCCAATCTTGTGCGTTGCGAGA AATGTTGCTTGCAATGTTAGAGGTGGTTTCTTCAAAGAATTTGATGAGGGTCTTCTGCAGAAGATACCTGAGGTTGCATATGAAGATGATACCAGTAATA TTCCTTCTCCTCCTGATGTGAGCAACTACTTAGTTTCAGAGGATGATGCTTCTGCTGCAAATGGAAACAGAGATCCACCTTCTTTTGACAGCACGGCAGA TGCTGAGGTTGAAAGACGGCTAAAGGAAGCAGTTTCAGCTTCTTCAACAATCCCCTCAACAATTCCTTCAACAGTCAGCAGCTTAGATCCAAGGCTTCTT CAGTCTCTCCAATACGCAGTGGCATCTTCTTCAAGCTTGATGCCAGCATCACAACCATCAATGCTGGCATCACAACAGCCAGTGCCAGCATCACAAACAT CAATGATGCCATTTCCCAACACACAGTTCCCTCAGGTGGCTCCACTAGTTAAACAGTTAGGCCAGGTTGTTCATCCAGAACCAAGCTTGCAGAGTTCTCC TGCTCGAGAAGAAGGTGAAGTACCTGAATCTGAATTAGATCCTGATACAAGGAGGCGGCTTCTCATATTACAACATGGGCAAGATTCAAGAGACAATGCA CCAAGTGAATCCCCATTTCCTGCAAGACCTTCAGCACCAGTGTCAGCTGCACATGTGCAATCTCGTGGAAGCTGGGTTCCAGTGGAGGAAGAGATGACCC CAAGGCAACTTAACCGAACACCCAGAGAATTTCCTCTAGATTCAGATCCAATGAATATTGAAAAGCACCAAACTCATCATCCATCCTTTTTTCCTAAGGT TGAGAGTAATATTCCATCTGATAGGATGATTCATGAGAATCAAAGACTGCCAAAAGAGGCACCTTATAGAAATGATCGGATGAGGCTAAACCATTCAACT CCCAATTATCATTCTTTCCAAGTGGAGGAGACTCCATTGAGTAGATCATCCAGCAACAGGGACCTTGACTTGGAATCTGAGCGAGCTTTTACAATTTCTG AAACTCCAGTTGAAGTTTTGCAAGAAATTGCGATGAAGTGTGAAACCAAGGTGGAATTCAGGCCTGCTTTGGTTGCTAGCATAGATCTGCAGTTCTCCAT TGAGGCTTGGTTTGCAGGAGAAAAGGTTGGTGAAGGAACTGGTAAAACAAGAAGAGAAGCCCAACGTCAGGCAGCTGAGGGTTCTATTAAGAAGTTAGCT GGCATATATATGTTGCGTGCGAAGCCTGATTCTGGGCCCATGCATGGGGATTCAAGTAGATATCCTAGTGCAAACGACAATGGTTTCTTGGGTAATATGA ATTTATTTGGAAATCAGCCTTTGCCTAAAGATGAGCTAGTTGCATATTCAGCTGCTTCAGAGCCATCCAGGCTTCTGGATCCAAGGCTGGAAGGCTCTAA GAAATCATCGGGTTCTGTCACTGCACTCAAAGAATTTTGCACGATGGAGGGACTTGTAGTAAATTTTTTGGCACAGACTCCACTTTCAGCTAATTCAATA CCAGGAGAGGAAGTACATGCACAGGTTGAAATAGATGGACAGGTTCTTGGGAAGGGGATTGGGTCGACATGGGATGAAGCTAAGATGCAGGCTGCCGAAA AGGCCCTTGGAAGTCTAAGAACAATGTTCGGTCAATATACACAGAAACGACAGGGTTCCCCTAGGCCAATGCAAGGGATGCCAAATAAACGTCTAAAGCA AGAGTTTCCGCGAGTTCTGCAGCGCATGCCCCCTTCTGCTAGATATCACAAGAATGCTCCTCCTGTTCCTTGA
AA sequence Show only first row Show all	>Potri.011G049400.2 pacid=42782333 polypeptide=Potri.011G049400.2.p locus=Potri.011G049400 ID=Potri.011G049400.2.v4.1 annot-version=v4.1 MYKSVVYKGEELLGEVEIYAQEQQQEEEENKNKRKRVIDEIVKGIRISHFSQASERCPPLAVLHTITSIGVCFKMEESTASSSTKISSQQESPLRLLHSS CIQENKTAVMHLGGEELHLVAMPSRSNERKHPCFWGFNVASGLYDSCLVMLNLRCLGIVFDLDETLIVANTMRSFEDKIEALQKKISTEVDQQRILAIIS EIKRYQDDKIILKQYVENDQVIENGKVIKTQFEVVPAASDNHQPLVRPLIRLPEKNIIFTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCT MAERDYALEMWRLLDPESNLINSNELLDRIVCVSSGSRKSLFNVFQDGICHPKMALVIDDRMNVWDEKDQSRVHVVPAFAPYYAPQAEANNAVPILCVAR NVACNVRGGFFKEFDEGLLQKIPEVAYEDDTSNIPSPPDVSNYLVSEDDASAANGNRDPPSFDSTADAEVERRLKEAVSASSTIPSTIPSTVSSLDPRLL QSLQYAVASSSSLMPASQPSMLASQQPVPASQTSMMPFPNTQFPQVAPLVKQLGQVVHPEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDSRDNA PSESPFPARPSAPVSAAHVQSRGSWVPVEEEMTPRQLNRTPREFPLDSDPMNIEKHQTHHPSFFPKVESNIPSDRMIHENQRLPKEAPYRNDRMRLNHST PNYHSFQVEETPLSRSSSNRDLDLESERAFTISETPVEVLQEIAMKCETKVEFRPALVASIDLQFSIEAWFAGEKVGEGTGKTRREAQRQAAEGSIKKLA GIYMLRAKPDSGPMHGDSSRYPSANDNGFLGNMNLFGNQPLPKDELVAYSAASEPSRLLDPRLEGSKKSSGSVTALKEFCTMEGLVVNFLAQTPLSANSI PGEEVHAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRTMFGQYTQKRQGSPRPMQGMPNKRLKQEFPRVLQRMPPSARYHKNAPPVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	0	1
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	1.00	0.9458
AT1G27750			nucleic acid binding (.1)		Potri.014G017000 [exp]	2.44	0.9211
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Potri.015G008700 [exp]	3.16	0.9084
AT1G40390			DNAse I-like superfamily prote...		Potri.003G024501 [exp]	4.47	0.8993
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	4.89	0.9094	CHB904,CHB4.1
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.002G139500 [exp]	5.74	0.8953
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	6.00	0.9101
AT1G06710			Tetratricopeptide repeat (TPR)...		Potri.007G123600 [exp]	6.32	0.9051
AT1G54380			spliceosome protein-related (....		Potri.007G124150 [exp]	6.70	0.9034
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	7.00	0.9065

Compare expression of checked genes

Potri.011G049400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.