Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20760 202 / 1e-62 Clathrin light chain protein (.1) AT2G40060 187 / 5e-58 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 170 / 4e-51 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040100 [exp] 376 / 6e-131 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1) Potri.016G114700 [exp] 198 / 4e-62 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.019G102000 [exp] 199 / 5e-61 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.010G190400 [exp] 166 / 6e-50 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1) Potri.008G066800 [exp] 164 / 6e-49 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018480 [exp] 275 / 3e-91 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1) Lus10011194 [exp] 274 / 1e-90 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1) Lus10018582 [exp] 168 / 3e-49 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1) Lus10004389 [exp] 165 / 3e-49 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1) Lus10030401 [exp] 164 / 6e-49 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1) Lus10040187 [exp] 159 / 9e-47 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1) Lus10039815 [exp] 156 / 5e-45 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1) Lus10037839 [exp] 0 / 1 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [poplar] [flax] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Potri.011G049500.1 pacid=42782289 polypeptide=Potri.011G049500.1.p locus=Potri.011G049500 ID=Potri.011G049500.1.v4.1 annot-version=v4.1 ATGGCTGCCTTTGATGCATTTGAAGACATTCAACCTTCAAATCACACACCTTTCGATGAAGTAGACGATGAGAGCTACTCCAACTTCAGCTCTTACTCCA CCGCCGCTGCCGCTCCCGGTGAGTTCTCCGGAGGAGGTGTGTCCGTCGATCACGTCAGTGCTTCTCCTGATGTGTTCGGGTTCGGATCTAATGCGGATCC CGGTTATCCTCATCAGAGTCCGTTCGGGTCGGTACATGTTGAGAACGGGAATGGTAGTAATGGATATAATGGAGCGGACGATGGCTTCTTTGTGAGTGAT GGACCGATCCTTCCTCCGCCTACTGAAATGGAGCCTGAAGAGGGTTTCGCTCTTCGCGAGTGGCGTCGTCAAAATGCCATGCATCTTGAGGAAAAAGAGA AGAGAGAGAAGGACATGAGGAAACAGATAATTGAAGAAGGGGAGGAGTATATACGTGGTTTCTATGAGAAGAGGAAGCTCAATATTGAGACCAACATAGC GACTAACAGAGAAAGGGAGAAGTTGTACTTCGCCAATCAAGAGAAATTCCACAAAGAGGCAGACAAACAGTACTGGAAAGCAATAGCGGAGCTTATTCCT CGCGAGGTTCCTAATATTGAGAAGAAGAGAGGCAAGAAGGATAAGGATCAAGATAAGATGCCATCAATTACCGTAATCCAGGGCCCAAAGCCTGGAAAAC CCACTGATCTTTCAAGGTTGCGCCATTTACTTGTTAAGCTGAAGCACACACCCCCACCACATATGATTCCACCCCCACCTCCTCTAAAAGATGCCAAAGA TGGGAAGGAAGGAAAAGATGCAACAGCAGGTGCAACTGTGTCAGGAACAAAGGGGGAGGCTGCTCCAGTTGCCAAAGAAGCCACTGCAAATGGTTCCTCC AACACGCCCAAAGAAGATGTCGCTGCTGCCAATGCCCAGCCTGTCGCAGAACCAGAGTCAACACCAGCTGCCTAA
AA sequence Show only first row Show all	>Potri.011G049500.1 pacid=42782289 polypeptide=Potri.011G049500.1.p locus=Potri.011G049500 ID=Potri.011G049500.1.v4.1 annot-version=v4.1 MAAFDAFEDIQPSNHTPFDEVDDESYSNFSSYSTAAAAPGEFSGGGVSVDHVSASPDVFGFGSNADPGYPHQSPFGSVHVENGNGSNGYNGADDGFFVSD GPILPPPTEMEPEEGFALREWRRQNAMHLEEKEKREKDMRKQIIEEGEEYIRGFYEKRKLNIETNIATNREREKLYFANQEKFHKEADKQYWKAIAELIP REVPNIEKKRGKKDKDQDKMPSITVIQGPKPGKPTDLSRLRHLLVKLKHTPPPHMIPPPPPLKDAKDGKEGKDATAGATVSGTKGEAAPVAKEATANGSS NTPKEDVAAANAQPVAEPESTPAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20760			Clathrin light chain protein (...		Potri.011G049500 [exp]	0	1
AT2G20760			Clathrin light chain protein (...		Potri.004G040100 [exp]	1.00	0.9205
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.006G157000 [exp]	7.34	0.9088
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Potri.007G134200 [exp]	8.30	0.8709
AT5G59840			Ras-related small GTP-binding ...		Potri.001G236100 [exp]	12.16	0.8962	Pt-RAB8.2
AT1G67930			Golgi transport complex protei...		Potri.002G058300 [exp]	12.32	0.8734
AT3G22070			proline-rich family protein (....		Potri.007G120101 [exp]	17.49	0.8877
AT1G13730			Nuclear transport factor 2 (NT...		Potri.010G157800 [exp]	22.02	0.8945
AT3G45230			hydroxyproline-rich glycoprote...		Potri.004G210300 [exp]	25.23	0.8911
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.017G119900 [exp]	28.98	0.8768
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.008G025600 [exp]	33.49	0.8831

Compare expression of checked genes

Potri.011G049500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.